gerstung-lab MutationTimeR issues

gerstung-lab / MutationTimeR

An R package to time somatic mutations

60 stars 24 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

VCF file - clarification

#21 l0ka closed 3 weeks ago
1
Timing CNVs for WGD Samples

#20 iozkaraca opened 8 months ago
0
Tutorial crashes at addMutTime()

#19 jeff-mandell opened 12 months ago
1
if `clonal_frequency` corresponds to `purity / abberrant cell fraction` from ascat

#18 ChelseaCHENX opened 1 year ago
0
Inquiry about the definition of each colnames in the output

#17 lincj1994 opened 1 year ago
1
CNV input file format when there are sub clonal CNV segments

#16 shaghayeghsoudi closed 3 years ago
2
If the minor_cn >=2, the time is N/A

#15 FreyaVan opened 3 years ago
0
Example input structural variants

#14 iS4i4S opened 3 years ago
3
ablines in .plotTiming

#13 giovianco opened 3 years ago
0
Whole-exome data input

#12 carladosanjos opened 3 years ago
1
help in describing the input

#11 kzkedzierska opened 3 years ago
7
Added support for Mutect2 AD/DP format fields

#10 mg14 closed 3 years ago
0
plotSample error

#9 carladosanjos closed 3 years ago
2
readVcf # Point mutations, needs `info` columns t_alt_count t_ref_count

#8 carladosanjos closed 3 years ago
1
What is the meaning of "CLS = NA"?

#7 b-niu closed 4 years ago
1
Ask about the usage of the "clusters" parameter

#6 b-niu closed 4 years ago
4
clonal_frequency clarification

#5 Sames-Jtudd closed 4 years ago
7
Reporting probabilities for all subclones

#4 mg14 opened 4 years ago
0
Merge with forked MutationTimeR version of PCAWG assignment pipeline

#3 sdentro closed 6 years ago
0
Example

#2 bluesea2017 closed 4 years ago
2
Changes made for consensus assignment pipeline

#1 sdentro closed 6 years ago
1