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getzlab
/
canine
A modular, high-performance computing solution to run jobs using SLURM
https://getzlab.github.io/canine/
BSD 3-Clause "New" or "Revised" License
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Update file_handlers.py get_requester_pays
#153
cchu70
closed
6 days ago
1
Drs via drshub - faster localization
#152
evergreen700
closed
4 months ago
0
Replaced almost all gsutil calls with gcloud storage
#151
evergreen700
closed
4 months ago
0
Improved delocalization checksum
#150
dpmerrell
opened
4 months ago
0
GS localization fails if user doesn't have list permissions for bucket of input
#149
njharlen
closed
1 month ago
0
Implement DRS URI localization.
#148
dheiman
closed
2 weeks ago
0
Added -m flag to `gsutil cp` in GSURL file handler localization command
#147
dpmerrell
opened
6 months ago
0
Add localizer for DRS URIs, and update GDC handler to use it when available
#146
dheiman
opened
7 months ago
7
Better logic for detecting how many times job had been preempted
#145
julianhess
closed
8 months ago
0
Fix localization retry
#144
julianhess
closed
8 months ago
0
Delete file on md5 check failure
#143
dheiman
opened
12 months ago
0
Recover from controller timeout
#142
julianhess
closed
1 year ago
0
Add new condition here for localization that hit quota issue; infinite retries
#141
julianhess
opened
1 year ago
3
Wipe output directory upon job retry
#140
julianhess
opened
1 year ago
0
mount error not caught
#139
jalberge
closed
1 year ago
2
NFS improvements
#138
julianhess
closed
1 year ago
0
Distinguish restarts due to preemptions from restarts due to failures
#137
julianhess
closed
1 year ago
0
Suspend job that's been preempted too often
#136
julianhess
closed
1 year ago
0
delete corrupted files upon md5 failure
#135
oliverpriebe
closed
1 year ago
0
Disk fixes
#134
julianhess
closed
1 year ago
0
Localization tweaks
#133
julianhess
closed
1 year ago
0
Add support for common VM/Docker images
#132
julianhess
closed
1 year ago
0
Enable toggling of scratch disk job avoidance
#131
julianhess
closed
1 year ago
0
More improvements to disk handling
#130
julianhess
closed
1 year ago
0
Compute partial hashes for big outputs
#129
julianhess
closed
1 year ago
0
Don't kill straggling jobs upon backend exit
#128
julianhess
closed
1 year ago
0
Make workflow log more user friendly
#127
julianhess
closed
1 year ago
0
Fix bug in scatter of gather jobs
#126
julianhess
closed
1 year ago
0
Dramatically increase speed of GCS operations
#125
julianhess
closed
1 year ago
0
More disk robustness updates
#124
julianhess
closed
1 year ago
0
Scratch disk robustness improvements
#123
julianhess
closed
1 year ago
0
Make inspecting disks much faster (use API vs. gcloud CLI)
#122
julianhess
closed
1 year ago
0
fix localized_path issue
#121
julianhess
closed
1 year ago
0
Revamp how job spec is created from raw input arrays
#120
julianhess
closed
1 year ago
0
Properly mangle all inputs if their filenames are duplicated
#119
julianhess
closed
1 year ago
0
Disable exit 15 avoidance in debug mode
#118
julianhess
closed
1 year ago
0
Do not run delocalization script in debug mode, or if we had an exit 15 avoidance
#117
julianhess
closed
1 year ago
0
Revamp delocalization hashing code
#116
julianhess
closed
1 year ago
0
Add pass-through support for rodisk URLs
#115
julianhess
closed
2 years ago
0
Remove trailing slashes from local paths
#114
julianhess
closed
2 years ago
0
Patch _get_size() to recursively determine total disk utilization for…
#113
yoakiyama
closed
2 years ago
0
Block when trying to create a RODISK whose creation is already in progress
#112
julianhess
closed
2 years ago
0
added stream capabilities for GDC and AWS URLs
#111
oliverpriebe
closed
2 years ago
0
crossmnt to allow for nested mounts in NFS
#110
julianhess
closed
2 years ago
0
Automatically purge files in working dir that aren't captured as outputs
#109
julianhess
closed
2 years ago
0
Add dry run support for persistent disk creation
#108
julianhess
closed
2 years ago
0
Symlink check
#107
julianhess
closed
2 years ago
0
Don't clobber existing files when symlinking from common
#106
julianhess
closed
2 years ago
0
Fix copying gs:// directories
#105
julianhess
closed
2 years ago
0
Localize AWS S3 files
#104
julianhess
closed
2 years ago
0
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