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gf-dcc
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data-model
Gray Foundation data model
https://gf-dcc.github.io/data-model/
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Patch/reduce exposure
#51
anngvu
closed
1 year ago
0
Add something like `DetailedSampleID` to all sequencing file templates
#50
anngvu
closed
2 months ago
0
Add HEIC file format
#49
anngvu
closed
1 year ago
0
Update SampleID/ParticipantID regex to contain no spaces
#48
anngvu
opened
1 year ago
0
Patch/cohort
#47
cconrad8
closed
1 year ago
0
patch-scRNAseqlvl4
#46
cconrad8
closed
1 year ago
0
Close #44
#45
anngvu
closed
1 year ago
0
Import and update biospecimen template
#44
anngvu
closed
1 year ago
0
Create or alias a DNA-seq template (level 1)
#43
anngvu
closed
1 year ago
0
Bring testing upgrades to display test results here
#42
anngvu
closed
1 year ago
0
Remove unused properties and other elements
#41
anngvu
closed
1 year ago
0
Feat/add issue worfklow
#40
anngvu
closed
1 year ago
0
Set up Actions for adding issues to main GH Project
#39
anngvu
closed
1 year ago
0
adding scRNA seq level 4
#38
cconrad8
closed
1 year ago
0
Expand test suite with test validation
#37
anngvu
opened
1 year ago
0
Create devcontainer.json
#36
anngvu
closed
1 year ago
0
Set up devcontainer
#35
anngvu
closed
1 year ago
0
Update scripts/downstream configs to generate templates for additional scRNA-seq levels
#34
anngvu
closed
1 year ago
0
Import scRNA-seq Level 4 template
#33
anngvu
closed
1 year ago
0
Add `Diagnosis Status Type`
#32
anngvu
closed
1 year ago
0
Revise IDs per #30
#31
anngvu
closed
1 year ago
0
Don't use unnecessary namespacing (qualifiers) in ids
#30
anngvu
closed
1 year ago
1
Patch/test gen template
#29
anngvu
closed
1 year ago
0
Translate LinkML <-> schematic JSON-LD
#28
anngvu
closed
1 year ago
0
Patch/template test preview
#27
anngvu
closed
1 year ago
0
Add tests to generate templates from data model
#26
anngvu
closed
1 year ago
0
Data model reorg and fix imports
#25
anngvu
closed
1 year ago
0
dm/reorg imports
#24
anngvu
closed
1 year ago
0
Template development for Tapestri data
#23
anngvu
opened
1 year ago
2
Import publications template
#22
anngvu
closed
1 year ago
0
Refactor cohort patient models to better reflect incoming data stages
#21
anngvu
closed
1 year ago
0
Update schema convert workflow
#20
anngvu
closed
1 year ago
0
Fix/update template
#19
anngvu
closed
1 year ago
0
"Sample Site" instead of "Sample Collection Site"
#18
anngvu
closed
1 year ago
0
Patch/rfc update
#17
anngvu
closed
2 years ago
0
Add "Previous Diagnosis"
#16
brynnz22
closed
8 months ago
0
Add 'Menstrual Cycle Phase' from Cohort Core RFC
#15
anngvu
closed
8 months ago
1
Add `BMI` and clarify description to reference sample colletion
#14
anngvu
closed
10 months ago
1
Reconcile suggestion for 'Tobacco Smoking Status'
#13
anngvu
opened
2 years ago
0
Reconcile suggestion for `Alcohol Intensity` -- replace with `Drinks per Week`?
#12
anngvu
closed
1 year ago
1
Add distinction between `Primary Diagnosis` and `Case Control Status`
#11
anngvu
closed
8 months ago
1
Add "Height" and "Weight" to data model from Clinical Core RFC
#10
anngvu
closed
1 year ago
0
Add separate fields for 'BRCA1 Mutation Pathogenicity' & 'BRCA2 Mutation Pathogenicity'
#9
anngvu
closed
7 months ago
3
Add new `ER Status`, `PR Status`, `HER2 Status`
#8
anngvu
closed
1 year ago
0
Add existing `Tumor Grade`to Sample Core
#7
anngvu
closed
1 year ago
0
Add new 'Sample Collection Year' or 'Sample Collection Index'
#6
anngvu
closed
1 year ago
2
Add new 'Sample Collection Site'
#5
anngvu
closed
1 year ago
0
Add new 'Antibiotic Use'
#4
anngvu
closed
1 year ago
0
Add "Cell Subtype" to single-cell file metadata collection if not present
#3
anngvu
opened
2 years ago
0
Add RAD51C enum to `Cancer Associated Gene Mutations`
#2
anngvu
closed
1 year ago
0
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