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ggirelli
/
pygpseq
Python3 package to analyse GPSeq images and manage TIFF files.
MIT License
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Sourcery refactored dev branch
#25
sourcery-ai[bot]
closed
3 years ago
1
v3.4.0
#24
ggirelli
closed
3 years ago
1
Bump jinja2 from 2.10 to 2.11.3
#23
dependabot[bot]
closed
3 years ago
2
URGENT: add compatibility with matplotlib>=3.0
#22
ggirelli
opened
5 years ago
0
Better error report and format check in fromfish_merge
#21
ggirelli
opened
5 years ago
0
In gpseq_anim calculate statistics of signal channel per nucleus.
#20
ggirelli
opened
6 years ago
0
Add flexible nuclear selection tool (aim at sub-population selection).
#19
ggirelli
opened
6 years ago
1
Crashed for unknown reasons
#18
ggirelli
opened
6 years ago
1
DFE can merge nuclei, add watershed option in tiff_auto3dseg
#17
ggirelli
opened
6 years ago
1
Missing dependencies to czifile and cython packages in setup.py
#16
ggirelli
closed
6 years ago
1
Support for 2D fields in czi/nd2_to_tiff
#15
ggirelli
closed
6 years ago
2
Additional options to `tiff_findoof`
#14
ggirelli
closed
6 years ago
3
In tiff_splitt, -I has the opposite behaviour from expected.
#13
ggirelli
closed
6 years ago
1
In tiff_auto3dseg use `gcc.export_settings`.
#12
ggirelli
closed
6 years ago
1
Retain nd2 metadata when converting to tiff in `nd2_to_tiff`.
#11
ggirelli
closed
6 years ago
1
Clean `tools.binarization` module.
#10
ggirelli
closed
6 years ago
1
G1 filter in `gpseq_fromfish`
#9
ggirelli
closed
6 years ago
1
Standardize XYZ coordinate noation
#8
ggirelli
closed
6 years ago
1
Re-factor for better documentation with python `help()`.
#7
ggirelli
closed
6 years ago
1
Undocumented warnings
#6
elgw
closed
6 years ago
1
double negations are hard for non-super-humans
#5
elgw
closed
6 years ago
1
warnings from gpseq_fromfish
#4
elgw
closed
6 years ago
1
gpseq_fromfish got stuck at a corrupt image
#3
elgw
closed
6 years ago
1
Better error message when only one channel tiff is missing
#2
tomkal
closed
6 years ago
1
Initial Update
#1
pyup-bot
closed
7 years ago
0