A Part II Project at PSCam with Howard Griffiths, Myriam Goudet and Charles Li
Oct 10: Meeting up to dicuss the work plan - HG, GY, ZCL, MMMG
Oct 11: Setting up the new Repo with ZCL GY MMG HG https://github.com/gilienv/ChlamyHub/blob/master/README.md
Oct 13: Use of terminal/logging into cluster ZCL&MMMG
Oct 14: ZCL connected to cluster& filezilla setup done
Oct 15: Practiced BLAST and SPAdes assembly, MMMG demonstrated assembly on cluster- ZCL start assembly on Thursday'
Oct 17: ZCL submitted Cr. augustae genome assembly - job id: 217421.0
ZCL created https://github.com/gilienv/ChlamyHub/blob/master/ProgressLog.md -work progress log
Oct 18: GY& ZCL meeting 3pm. - Discussion on Reconstruction of Plastidial genome
Oct 21: GY: Added new file to initiate work on plastidial genome
Oct 22: GY: Assigned Issue to ZCL
Oct 22: GY Added new file for very basic tutorials on Unix shell scritping
Oct 31: GY demonstrated node extraction from assembly
Nov 5: MMMG and ZCL did gene annotation on geneious, wrote shell file for obtaining reads used