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glasgowcompbio
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PALS
Ranking metabolite (and other omics sets) by their activity levels via SVD
https://pals.glasgowcompbio.org
MIT License
2
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Streamlit app does no longer seem to connect to GNPS
#49
justinjjvanderhooft
closed
8 months ago
1
Bump streamlit from 0.78.0 to 1.11.1
#48
dependabot[bot]
opened
2 years ago
0
GNPS analysis throwing non-finite values error
#47
mita0000
opened
3 years ago
1
GNPS analysis doesn't work
#46
joewandy
opened
3 years ago
3
Parallelise running multiple comparisons
#45
joewandy
opened
3 years ago
1
Tidy up PALS output
#44
joewandy
opened
4 years ago
0
GNPS command-line analysis
#43
joewandy
opened
4 years ago
0
Broken CSV upload in GUI
#42
joewandy
closed
4 years ago
1
Incorporate spectrum resolver in molfam / motif analysis?
#41
joewandy
opened
4 years ago
2
Add minimum number of hits to pathway analysis
#40
joewandy
closed
4 years ago
1
Add heatmaps for pathways
#39
RonanDaly
closed
4 years ago
1
Add example data for MF and Mass2Motif data
#38
RonanDaly
closed
4 years ago
3
PALS error with GNPS FBMN network
#37
joewandy
closed
4 years ago
9
Read GNPS metadata directly from the zip file
#36
joewandy
opened
4 years ago
2
Add fold change or PLAGE score to PALS Viewer
#35
joewandy
opened
4 years ago
1
Download more data in PALS Viewer
#34
joewandy
opened
4 years ago
1
Update readme
#33
joewandy
closed
4 years ago
0
Activity Level Calculation
#32
joewandy
closed
4 years ago
1
Google finding wrong canonical url for page
#31
RonanDaly
closed
4 years ago
2
Formatting of very small numbers
#30
joewandy
closed
4 years ago
2
Integrate MS2LDA Analysis to PALS Viewer
#29
joewandy
closed
4 years ago
1
Integrate GNPS analysis to PALS Viewer
#28
joewandy
closed
4 years ago
1
Sorting by Formula Coverage doesn't work
#27
RonanDaly
closed
4 years ago
2
Setup Neo4j (Reactome) on the server
#26
joewandy
closed
4 years ago
2
Configure SSL on the server
#25
joewandy
closed
4 years ago
1
Add a Run button to PALS Viewer
#24
joewandy
opened
4 years ago
5
Add GSEA to PALS Viewer
#23
joewandy
opened
4 years ago
0
User-friendly way to run PALS Viewer locally
#22
joewandy
opened
4 years ago
0
Dump the latest Reactome database
#21
joewandy
closed
4 years ago
0
Create a page for glasgowcompbio.org
#20
joewandy
opened
4 years ago
1
Configure nginx on the server
#19
joewandy
closed
4 years ago
2
Correctly start up PALS Viewer on the server
#18
joewandy
closed
4 years ago
3
User guide & general usage instruction
#17
joewandy
closed
4 years ago
2
Add interactive examples
#16
joewandy
closed
4 years ago
1
Update PALS to handle cmpd_ids from a variety of DBs
#15
kmcluskey
opened
4 years ago
0
Remove pathways with single formula
#14
kmcluskey
closed
4 years ago
1
PALS Package missing dependancies when installed
#13
kmcluskey
closed
4 years ago
3
Update synthetic experiment notebook
#12
joewandy
closed
4 years ago
0
Investigate the effect of varying the PLAGE and hypergeometric components
#11
joewandy
closed
4 years ago
0
Evaluation
#10
joewandy
closed
5 years ago
1
Download the latest KEGG database
#9
joewandy
opened
5 years ago
0
Implements traditional ORA
#8
joewandy
closed
4 years ago
1
Zero p-values shown in PALS results in PiMP
#7
joewandy
opened
5 years ago
1
Error loading PALS when neo4j user/password is not defined and/or is incorrect
#6
RonanDaly
closed
5 years ago
0
Write README
#5
joewandy
closed
4 years ago
1
Create a command-line program to run PALS
#4
joewandy
closed
5 years ago
0
Replace the pathway analysis codes in Pimp with this package
#3
joewandy
opened
5 years ago
0
Suspicious warning
#2
joewandy
opened
5 years ago
2
neo4j username and password appear to be hard coded.
#1
RonanDaly
closed
5 years ago
0