globaldothealth fhirflat issues

globaldothealth / fhirflat

ISARIC 3.0 Pipeline - FHIRFlat

https://fhirflat.readthedocs.io

MIT License

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[pre-commit.ci] pre-commit autoupdate

#73 pre-commit-ci[bot] opened 3 weeks ago
0
Bug fixes and additional warnings from first attempt at mapping Dengue data

#72 pipliggins opened 1 month ago
1
temporary pr

#71 pipliggins closed 1 month ago
0
Nested ICU encounters

#70 pipliggins opened 1 month ago
0
old autofhir

#69 pipliggins opened 1 month ago
0
[pre-commit.ci] pre-commit autoupdate

#68 pre-commit-ci[bot] closed 1 month ago
0
Add a timingPhaseDetail extension

#67 pipliggins closed 1 month ago
1
[pre-commit.ci] pre-commit autoupdate

#66 pre-commit-ci[bot] closed 1 month ago
0
Diagnostic report resource added

#65 pipliggins closed 1 month ago
1
Speed: take 2

#64 pipliggins closed 1 month ago
2
temporary parallel branch

#63 pipliggins closed 1 month ago
0
[pre-commit.ci] pre-commit autoupdate

#62 pre-commit-ci[bot] closed 1 month ago
0
Split ingestion pipeline

#61 pipliggins closed 1 month ago
1
New module: automapper

#60 abhidg opened 2 months ago
0
[pre-commit.ci] pre-commit autoupdate

#59 pre-commit-ci[bot] closed 2 months ago
0
[pre-commit.ci] pre-commit autoupdate

#58 pre-commit-ci[bot] closed 3 months ago
0
Generate taxonomy file from mapping sheet

#57 abhidg opened 3 months ago
0
Allow output file to be zipped

#56 pipliggins closed 3 months ago
1
use jupyterbook

#55 abhidg closed 3 months ago
2
Split data ingestion into process and validate

#54 pipliggins closed 1 month ago
0
ci: rename test.yml -> tests.yml

#53 abhidg closed 3 months ago
1
[pre-commit.ci] pre-commit autoupdate

#52 pre-commit-ci[bot] closed 3 months ago
0
Add additional ISARIC-specific extensions

#51 pipliggins closed 1 month ago
0
fhirflat test not reproducible

#50 abhidg closed 3 months ago
2
Create fhirflat.ini

#49 abhidg closed 3 months ago
2
Speed up ingestion

#48 pipliggins closed 1 month ago
1
Create `fhirflat.ini` file with summary

#47 abhidg closed 3 months ago
0
Catch validation errors

#46 pipliggins closed 3 months ago
1
Backbone element tracking

#45 pipliggins closed 3 months ago
1
Speed up data transformation time

#44 pipliggins closed 1 month ago
3
Handle validation errors during data ingestion

#43 pipliggins closed 3 months ago
0
Track length of backbone elements

#42 pipliggins closed 3 months ago
0
Increase test coverage

#41 pipliggins closed 3 months ago
1
docs

#40 abhidg closed 4 months ago
1
FHIRflat transform CLI for redcap -> fhirflat

#39 pipliggins closed 3 months ago
2
Lint with ruff

#38 pipliggins closed 4 months ago
0
Format dates to ISO8601 in ingestion

#37 pipliggins closed 4 months ago
1
Generate dummy REDCap data

#36 abhidg opened 4 months ago
0
fhirflat assumes leading zeroes are not significant, check if this is true or document

#35 abhidg opened 4 months ago
0
Document mapping file format

#34 abhidg closed 4 months ago
0
Add date format option in mapping doc

#33 abhidg closed 4 months ago
0
Output dates in ISO format as required by FHIR

#32 abhidg opened 4 months ago
1
Create fhirflat-transform CLI script

#31 abhidg closed 3 months ago
0
Fix type issues with mypy

#30 abhidg opened 4 months ago
0
Make Age and Duration extensions lower case for urls

#29 pipliggins closed 4 months ago
1
adtl like complex logic in spreadsheets

#28 abhidg opened 4 months ago
6
misc fixes

#27 abhidg closed 4 months ago
1
Use lowercase for elements Age and Duration

#26 abhidg closed 4 months ago
1
Turn into Python package

#25 abhidg closed 4 months ago
0
Draft attempt at ingestion using mapping file

#24 pipliggins closed 4 months ago
2