HirstLab

Code and summary results in Hirst Lab

• Pipeline: Analysis pipelines and instructions for tools
• FetalBrain: REMC Fetal Brain data analysis
• Glioma: CEMT Glioma data analysis
• AML: Cord blood and AML data analysis
• NHA: VitC treatment on IDH mut and IDH wt NHA cell line
• Breast: REMC Breast data analysis
• Others: General analysis related to thesis or commands for others
• Sam: Script from Sam, mostly for glioma project.
• SpikeIn: Normalize RNA-seq RPKM to Spike-in and RNA yield for Nicolette's project.
• SOP_QC: QC for optimizing MeDIP and hMeDIP SOP.
• MN1ND13: Humphries CB65_MN1ND13_DP and CB_MN1ND13_DN project.

Directory on xhost: /home/lli/HirstLab/