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google / deepsomatic

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.
BSD 3-Clause "New" or "Revised" License
96 stars 12 forks source link

Typo in readme? #1

Closed davidmasp closed 8 months ago

davidmasp commented 8 months ago

Hello!

Thanks for developing this tool, eager to try it out.

I saw what possibly it's a typo in the readme? both reads normal and tumor refer to the same filepath named normal.bam. I know it's not supposed to be a real file but it might be confusing to people if both the normal bam and the tumor bam arguments link to the same file in the "quickstart" code.

--reads_normal=${INPUT_DIR}/normal.bam \ **Path to normal bam file.
--reads_tumor=${INPUT_DIR}/normal.bam \ * Path to tumor bam file.

Best, DMP

pichuan commented 8 months ago

Thanks @davidmasp . That's a typo and we'll fix it.