Feature request: Output normal allelic depth

google / deepsomatic

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.

BSD 3-Clause "New" or "Revised" License

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Open proteinosome opened 5 months ago

proteinosome commented 5 months ago

@kishwarshafin, likely not a priority at this point, but outputting normal depth (as a separate sample column) could be useful for:

Tools that ingest somatic VCF, e.g. Purple in hmftools suite for purity/ploidy estimation
Manual inspection and QC visualization of variants

Thank you!

kishwarshafin commented 5 months ago

Hi @proteinosome ,

Thank you for the suggestion. I will note these requests.