google / deepsomatic

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.
BSD 3-Clause "New" or "Revised" License
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DeepSomatic without normal data #13

Closed malonzm1 closed 3 months ago

malonzm1 commented 4 months ago

Hi,

Can DeepSomatic be used without normal data?

Thanks and good day.

pichuan commented 3 months ago

Hi @malonzm1 ,

Currently - no. But we may release a tumor only mode in the future.

(I copied @danielecook 's answer from https://github.com/google/deepvariant/issues/784#issuecomment-1983210187 :))