Runing on Whole exome sequencing data

google / deepsomatic

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.

BSD 3-Clause "New" or "Revised" License

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Closed Cimorgh-IT closed 11 months ago

Cimorgh-IT commented 11 months ago

Can this tool used for short read WES data instead of WGS data?

pichuan commented 11 months ago

Hi @Cimorgh-IT , Currently we don't have DeepSomatic WES model, and have not evaluated any models on WES data.