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gpertea
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gffcompare
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
MIT License
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Missing tmap and refmap files
#43
fgypas
closed
4 years ago
2
Question: How do you find novel transcripts using GFFcompare?
#42
chahatupreti
opened
5 years ago
1
how to unnderstand the *.stats file?
#41
cuiuc12
opened
5 years ago
0
Sensitivity lower for stringtie merged gff than for component files
#40
rwdupcrgz
opened
5 years ago
0
question about code "="
#39
lufeng891109
opened
5 years ago
1
Fuzz matching of intron chains and exons
#38
ChristopherWilks
closed
5 years ago
4
Error building gffcompare
#37
DiogoVeiga
closed
5 years ago
4
too many input files (limit set to 500 at compile time)
#36
ZhuangZK
opened
5 years ago
4
Sensitivity/Precision Stats
#35
theheking
closed
5 years ago
2
How can I extract the novel exons?
#34
ashokpatowary
closed
5 years ago
2
Build fails
#33
trecakov
closed
5 years ago
4
single-exon transcript in reference
#32
yduanBioinfo
closed
5 years ago
2
Warning: reference transcript has undetermined strand, discarded.
#31
wangdepin
closed
5 years ago
1
Tagged Versions?
#30
jrdemasi
opened
6 years ago
3
Memory corruption while running gffcompare
#29
Florianus
closed
5 years ago
4
No coverage in .tmap file
#28
zoewardnz
opened
6 years ago
1
What's the mean of class code 'k'
#27
Trandamere
closed
6 years ago
5
Class code 'NA' when it should be '='?
#26
zoewardnz
closed
6 years ago
5
gffcompare giving 'NA's
#25
zoewardnz
closed
6 years ago
0
how to find novel genes and transcripts in gffcompare?
#24
naveenkumarv40
closed
6 years ago
2
Why the total transcripts in the .tmp file was less than the total transcripts in the input .gtf file
#23
syy2017
closed
6 years ago
1
gffcompare class code "x", what is the minimum overlap?
#22
dgelsin
closed
6 years ago
1
gffcompare run on stringtie --merge gtf file results in zeros in the summary text
#21
adeslatt
closed
7 years ago
2
.tracking file shouldn't be generated for a single query file
#20
gpertea
opened
7 years ago
0
gffcompare fails to match gtf without chr prepended to chromosome names
#19
brielin
closed
7 years ago
1
Difficulty matching behavior between older and newer gffcompare
#18
bioinfomagician
closed
6 years ago
6
Re: Deleted
#17
jfb4497
closed
7 years ago
0
Error running gffcompare
#16
lakhujanivijay
opened
7 years ago
3
update release tags
#15
0xaf1f
closed
6 years ago
1
How to compare CDS gff with genome guided assembled gff
#14
bioinfonext
opened
7 years ago
0
definition for single-exon transcript
#13
shaomingfu
closed
7 years ago
1
Extract transcript from assembly based on class code using gffread
#12
bioinfonext
closed
7 years ago
0
How to interpret sensitivity and precision?
#11
Vivianstats
closed
6 years ago
3
How to statistics the novel transcripts
#10
Trandamere
closed
6 years ago
2
Only 1 output file, input GTF is overwritten (v0.9.9)
#9
malloryfreeberg
closed
7 years ago
6
Output path of refmap and tmap
#8
culpinnis
closed
7 years ago
1
Interpreting sensitivity and precision
#7
jstrohm
closed
7 years ago
3
gff compare gives identical results for multiple files
#6
jstrohm
closed
7 years ago
3
Error allocating memory
#5
ggirelli
closed
7 years ago
5
-G option no longer exists
#4
Jeltje
closed
7 years ago
3
cannot locate input file: –r [likely solution]
#3
bassanio
opened
8 years ago
7
Add option to just get version and return a clean exit code when help is invoked.
#2
roryk
closed
8 years ago
0
straight annotation mode for single input file
#1
gpertea
closed
7 years ago
1
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