gphocs-dev G-PhoCS issues

gphocs-dev / G-PhoCS

G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual genome sequences.

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issues

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Run taking longer time than expected on HPC.

#89 rayistr opened 1 month ago
1
Is checkpointing available?

#88 alansill opened 6 months ago
1
Error generating tree with Control File Generator

#87 avalflo opened 1 year ago
1
Multiple definitions error when compiling

#86 milesandersonmn closed 2 years ago
3
ERROR when include the age of ancient samples (750000 years ago)

#85 PopGenomics-WMS closed 2 years ago
0
Program failed to read samples at the end of line

#84 rosehuang24 opened 3 years ago
1
Duplicating 2011 G-phocs paper results

#83 kmanoharan01 closed 3 years ago
4
Human two populaiton test

#82 kmanoharan01 closed 3 years ago
6
Infering divergence estimation

#81 kmanoharan01 closed 3 years ago
6
How to estimate gene flow time

#80 jiangzy26 opened 3 years ago
1
Human

#79 kmanoharan01 closed 3 years ago
4
How to interpret Total Migration Rate, exactly?

#78 ericopolo opened 3 years ago
6
unable to read trace file

#77 glaudelrio closed 3 years ago
2
bidirectional migration

#76 glaudelrio opened 3 years ago
2
monomorphic sites

#75 glaudelrio opened 3 years ago
2
Supplement Link is Broken

#74 justincbagley opened 3 years ago
1
Error while processing alignments

#73 willright28 opened 3 years ago
1
Only limited number of characters in CURRENT-POP module allowed?

#72 THccaa opened 4 years ago
1
polytomy and ancestral gene flow

#71 gargkritika opened 4 years ago
1
over estimating tau and Ne

#70 gargkritika opened 4 years ago
2
problems with multithread version

#69 gargkritika opened 4 years ago
1
possibility to restart a G-PhoCS analysis

#68 killidude closed 4 years ago
2
Error: in recorded genealogy log likelihood

#67 FatihSarigol opened 4 years ago
2
Two Issues: Multithreading and Finetuning

#66 btmartin721 closed 3 years ago
13
Segmentation fault, after MCMC finished

#65 focusjava closed 4 years ago
6
V140

#64 nomihadar closed 4 years ago
0
Can't load trace files

#63 btmartin721 closed 5 years ago
4
Errors with generating tree with ControlFileGenerator

#62 FatihSarigol opened 5 years ago
3
V140

#61 nomihadar closed 5 years ago
0
temp - uploaded for review

#60 nomihadar closed 5 years ago
0
V140

#59 nomihadar closed 5 years ago
0
V140

#58 nomihadar closed 5 years ago
0
V140

#57 nomihadar closed 5 years ago
0
new design

#56 nomihadar closed 5 years ago
0
new design

#55 nomihadar closed 5 years ago
0
adding methods to EventsGraph class

#54 nomihadar closed 5 years ago
0
Nomi branch

#53 nomihadar closed 5 years ago
0
Segmentation Fault (Core Dumped) after MCMC finishes

#52 g33k5p34k closed 5 years ago
2
Generating the Sequence File from Multiple Consensus Genomes

#51 FatihSarigol opened 6 years ago
7
Segmentation fault (core dumped)

#50 zapataf opened 6 years ago
3
Add license and reprint num-migs

#49 selotape closed 6 years ago
0
Basic Mig-ref-stats for review

#48 selotape closed 6 years ago
7
Implement "mig tau bounds"

#47 selotape closed 6 years ago
0
Age parameter in current-pops module

#46 avershinina opened 6 years ago
3
increase MAX_MIG_BANDS constant from 40 to 100

#45 selotape closed 6 years ago
0
Merge latest `dev` into mcref_dev

#44 selotape closed 6 years ago
0
Segmentation fault (core dumped)

#43 llanos-garrido opened 6 years ago
23
Mcref dev

#42 selotape closed 6 years ago
0
Minor bug in traceLineage (patch.c)

#41 evgenyidc opened 6 years ago
0
In tau_bounds, print taus and bounds using print factor (for compatibility with other printings)

#40 selotape opened 7 years ago
0