gphocs-dev G-PhoCS issues

gphocs-dev / G-PhoCS

G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual genome sequences.

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issues

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In tau_bounds, run `updateTauBoundsOfDescendants` when finished processing current genealogy

#39 selotape closed 7 years ago
0
In `calculateLociTauBounds`, return the lca instead of using `lca_pops` array

#38 selotape closed 7 years ago
0
Use global tau upper-bound in tau_bounds instead of magic const

#37 selotape opened 7 years ago
0
Lca calculation in tau_bounds should use a cache of all pop pairs

#36 selotape opened 7 years ago
0
Finished calculating and emitting tau bounds for mcref

#35 selotape closed 6 years ago
0
Lots of unused code in LocusDataLikelihood.cpp+h

#34 selotape opened 7 years ago
0
Lots of issues raised by CLion

#33 selotape opened 7 years ago
0
Mcref dev

#32 selotape closed 7 years ago
0
merging into upstream

#31 selotape closed 7 years ago
0
Mcref dev

#30 selotape closed 7 years ago
0
More issues raised by Valgrind

#29 selotape opened 7 years ago
1
Bad usage of processHetPatterns()

#28 selotape closed 7 years ago
2
fixed likelihood column names in trace file

#27 selotape closed 7 years ago
0
merged dev->mcref_dev and reenabled FlatStats

#26 selotape closed 7 years ago
0
Found a bug in vision 1.3 runing with multithreads

#25 shengwang opened 7 years ago
10
misspelling in MCMCControl.h

#24 selotape closed 7 years ago
1
suspect usage of "dataSetup.popTree->pops[param]->updateSampleAge" in MCMCControl:427

#23 selotape opened 7 years ago
1
added genealogyLogLikelihood column to trace file

#22 selotape closed 7 years ago
0
testing post-merge hook

#21 selotape closed 7 years ago
0
added pop stats printing for post-analysis

#20 selotape closed 7 years ago
0
testing pull request

#19 selotape closed 7 years ago
0
GPhoCS.h and patch.h

#18 gphocs-dev closed 7 years ago
2
dev update --> v1.3.1

#17 gphocs-dev closed 7 years ago
0
Completed "Comb Coalescence Statistics"

#16 selotape closed 7 years ago
0
GenealogyInPopTree.c&.h are obsolete

#15 selotape closed 7 years ago
2
src/GPhoCS.h:70:22: warning: ‘long_options’ defined but not used

#14 selotape closed 7 years ago
2
Unused declaration of function 'prueGenSubtree'. GenealogyInPopTree.c:197

#13 selotape closed 7 years ago
0
Statement has no effect 'event->sons[1]->father - event1'. GenealogyInPopTree.c:1156

#12 selotape closed 7 years ago
0
Statement has no effect 'event->sons[0]->father - event1'. GenealogyInPopTree.c:1155

#11 selotape closed 7 years ago
0
No return, in function returning non-void. In file GenealogyInPopTree.c:1403

#10 selotape closed 7 years ago
0
No return, in function returning non-void: GenealogyInPopTree.c:726

#9 selotape closed 7 years ago
0
Mcref dev

#8 selotape closed 7 years ago
0
master branch

#7 gphocs-dev closed 7 years ago
2
reset random seed with timestamp

#6 gphocs-dev closed 7 years ago
1
remove unused branches

#5 gphocs-dev closed 7 years ago
1
test issue

#4 gphocs-dev closed 7 years ago
0
Adding bin folder

#3 gphocs-dev closed 9 years ago
0
Adding the obj folder

#2 gphocs-dev closed 9 years ago
0
Create README.md

#1 gphocs-dev closed 9 years ago
0