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greenelab
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connectivity-search-analyses
hetnet connectivity search research notebooks (previously hetmech)
BSD 3-Clause "New" or "Revised" License
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Degree-grouped permutations archive
#127
zietzm
closed
6 years ago
2
Archive creation does not support pathlib paths
#126
zietzm
closed
6 years ago
1
Bulk computation pipeline
#125
zietzm
closed
6 years ago
0
ENH: hetmat archiving functionality
#124
dhimmel
closed
6 years ago
1
Gamma Hurdle DWPC model
#123
zietzm
opened
6 years ago
2
Add new permutations
#122
zietzm
closed
6 years ago
4
Standardize test hetnets & cache URL reads
#121
dhimmel
closed
6 years ago
1
Make hetmat a module & move caching code to submodule
#120
dhimmel
closed
6 years ago
0
Are informative DWPCs greater than permuted DWPCs?
#119
dhimmel
opened
6 years ago
1
Compare Z-DWPC distributions
#118
zietzm
closed
6 years ago
3
Add DWPC approximation method
#117
zietzm
closed
6 years ago
2
Add support for four-repeats.
#116
zietzm
closed
6 years ago
0
Add get_stats method to cache objects
#115
dhimmel
closed
6 years ago
1
Degree-grouped permutations implementation
#114
zietzm
closed
6 years ago
3
degree_weight: dwwc_method argument & default
#113
dhimmel
closed
6 years ago
1
DWWC recursive and chain-ordering
#112
zietzm
closed
6 years ago
7
In progress caching code
#111
dhimmel
closed
6 years ago
0
Move tests to separate directory
#110
dhimmel
closed
6 years ago
0
Prioritize segments for caching
#109
zietzm
closed
6 years ago
4
Caching and bulk computation of metapaths
#108
zietzm
closed
6 years ago
3
Generate new permuted HetMats
#107
zietzm
closed
6 years ago
4
Decorate degree-weight functions to support caching
#106
dhimmel
closed
6 years ago
1
HetMat: function to save matrices
#105
dhimmel
closed
6 years ago
0
Add graph permutations as HetMat method
#104
zietzm
closed
6 years ago
0
HetMat: read_path_counts function
#103
dhimmel
closed
6 years ago
0
degree_weight._dwpc_disjoint: recurse dwpc call for simplicity
#102
zietzm
closed
6 years ago
1
Update pQTL notebook to use hetmats
#101
dhimmel
closed
6 years ago
0
HetMat permutations: export hetio.hetnet graphs to hetmats
#100
dhimmel
closed
6 years ago
0
Update acknowledgements with Pfizer support
#99
dhimmel
closed
6 years ago
2
Travis CI: pin miniconda & updated conda usage
#98
dhimmel
closed
6 years ago
0
The hetmat awakens: a directory-structure and module for matrix-storage of hetnets
#97
dhimmel
closed
6 years ago
0
Degree-grouped permutations
#96
zietzm
closed
6 years ago
5
Alternative graph data structures
#95
zietzm
closed
6 years ago
5
Add dtype functionality in DWPC computation
#94
zietzm
closed
6 years ago
2
Suggest candidate causal genes for each pQTL
#93
dhimmel
closed
6 years ago
0
Add missing ignore & remove unused import
#92
dhimmel
closed
6 years ago
0
Estimate disk storage needed for all DWPC matrices
#91
zietzm
closed
6 years ago
6
Scipy sparse vector with memory map
#90
zietzm
closed
6 years ago
0
Add setup.py
#89
zietzm
closed
6 years ago
5
Using hetmech outside repository
#88
gwaybio
closed
6 years ago
7
Remove duplicate functionality with hetio.matrix
#87
dhimmel
closed
6 years ago
0
Adding entrez id column to pqtl.tsv
#86
naglem
closed
6 years ago
0
Add entrez ID column to pqtl.tsv
#85
naglem
closed
6 years ago
1
Add pqtl_entrez_id column to pqtl.tsv
#84
dhimmel
closed
6 years ago
1
Explore pQTL data
#83
dhimmel
closed
6 years ago
0
Add pqtl_entrez_id column to pqtl.tsv
#82
dhimmel
closed
6 years ago
12
Add pQTL data for pilot analysis
#81
naglem
closed
6 years ago
16
add xlrd to environment
#80
gwaybio
closed
6 years ago
0
Install xlrd >= 0.9.0 for Excel support
#79
gwaybio
closed
6 years ago
0
Comparison of disk storage methods within NumPy/SciPy
#78
zietzm
closed
6 years ago
7
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