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greenelab
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connectivity-search-manuscript
Manuscript describing Hetnet Connectivity Search
https://greenelab.github.io/connectivity-search-manuscript/
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Post-publication figure problems in the GigaScience HTML article
#56
dhimmel
opened
1 year ago
0
media: gigascience vector EPS images
#55
dhimmel
closed
1 year ago
0
EPS files for images with a vector source
#54
dhimmel
closed
1 year ago
3
Convert vector figures to EPS files for better quality in Gigascience PDF
#53
dhimmel
closed
1 year ago
18
Gigascience proof review
#52
dhimmel
closed
1 year ago
17
AI-based revision using text-davinci-003
#51
github-actions[bot]
closed
1 year ago
4
Revise based on GigaScience post-acceptance requests
#50
dhimmel
closed
1 year ago
8
Post-acceptance editorial requests from Gigascience
#49
dhimmel
closed
1 year ago
10
AI-based revision using text-davinci-003
#48
github-actions[bot]
closed
1 year ago
2
GigaScience revisions & response to reviewers part 4
#47
dhimmel
closed
1 year ago
1
GigaScience revisions & response to reviewers part 3
#46
dhimmel
closed
1 year ago
5
GigaScience revisions & response to reviewers part 2
#45
dhimmel
closed
1 year ago
4
Add clarification about the gamma hurdle probability equation
#44
zietzm
closed
1 year ago
1
GigaScience revisions & response to reviewers part 1
#43
dhimmel
closed
1 year ago
3
GigaScience editorial requests regarding software registration and citations
#42
dhimmel
closed
1 year ago
5
Completed a final read
#41
cgreene
closed
1 year ago
3
Freeze reference metadata and yaml manual references
#40
dhimmel
closed
2 years ago
5
Added myself (FSA) as a co-author
#39
falquaddoomi
closed
2 years ago
1
Update with K Kloster's authorship info
#38
kkloste
closed
2 years ago
1
Structural changes and introduction edits
#37
cgreene
closed
2 years ago
3
Add naglem author affiliation
#36
naglem
closed
2 years ago
2
Update metadata.yaml
#35
naglem
closed
2 years ago
2
Add Yun Hao's affiliation
#34
yhao-compbio
closed
2 years ago
2
Fix typo
#33
ben-heil
closed
2 years ago
1
Add Ben Heil to author list
#32
ben-heil
closed
2 years ago
1
Degree-group analysis figure
#31
dhimmel
closed
2 years ago
3
add basic frontend and website sections
#30
vincerubinetti
closed
3 years ago
6
Write the Webapp & Frontend methods section
#29
dhimmel
closed
3 years ago
1
Random citation scratchpad
#28
dhimmel
closed
1 year ago
4
Introduction tweaks and improvements
#27
dhimmel
closed
3 years ago
4
Add David to authorship list
#26
danich1
closed
3 years ago
2
Add Casey co-author
#25
cgreene
closed
3 years ago
1
Add zietzm authorship
#24
zietzm
closed
3 years ago
2
Add coauthors
#23
dhimmel
closed
2 years ago
10
Add TODOs to incomplete sections
#22
dhimmel
closed
3 years ago
1
methods: open science, software, data
#21
dhimmel
closed
3 years ago
7
Related works paragraph
#20
danich1
closed
4 years ago
2
null dwpc distributions figure
#19
dhimmel
closed
4 years ago
1
Gamma hurdle section
#18
zietzm
closed
4 years ago
2
Matrix DWPC section
#17
zietzm
closed
4 years ago
4
Methods: prioritizing enriched metapaths for database storage
#16
dhimmel
closed
4 years ago
1
Improve introduction sections on related works
#15
dhimmel
closed
4 years ago
7
Methods: DWPC and null distribution computation
#14
dhimmel
closed
4 years ago
4
Methods: Rest API & backend
#13
dhimmel
closed
4 years ago
5
methods: null DWPC summary statistics
#12
dhimmel
closed
4 years ago
1
Manual tweaks to improve the Rephetio feature heatmap and machine learning figure
#11
dhimmel
closed
1 year ago
16
methods: permuted hetnets & degree grouping
#10
dhimmel
closed
4 years ago
5
Methods: Computing DWPCs with matrix multiplication
#9
dhimmel
closed
4 years ago
10
Results: connectivity search webapp
#8
dhimmel
closed
4 years ago
7
Create a figure showing the webapp user flow
#7
dhimmel
closed
4 years ago
6
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