greenelab multi-plier issues

greenelab / multi-plier

An unsupervised transfer learning approach for rare disease transcriptomics

BSD 3-Clause "New" or "Revised" License

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issues

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rowNorm

#73 lbundalian opened 1 year ago
0
required normalization of input data

#72 lbdarragh closed 3 years ago
3
Is this file available for download?

#71 sgosline closed 4 years ago
1
Hyperlink DOIs to preferred resolver

#70 katrinleinweber closed 9 months ago
0
'PLIER' element in the list?

#69 shbrief closed 4 years ago
1
Add updated figshare to README

#68 jaclyn-taroni closed 5 years ago
0
Update notebook table of contents in README

#67 jaclyn-taroni closed 5 years ago
0
Add figure notebook for medulloblastoma

#66 jaclyn-taroni closed 5 years ago
0
Add MB differential expression notebook and results

#65 jaclyn-taroni closed 5 years ago
0
Update Docker container

#64 jaclyn-taroni closed 5 years ago
0
Add short experiment re: L2 parameter

#63 jaclyn-taroni closed 5 years ago
0
Update: all IFN-K panels in one plot

#62 jaclyn-taroni closed 5 years ago
0
Update neutrophil figure to include SLE MCPcounter results

#61 jaclyn-taroni closed 5 years ago
1
Fix: divide by sample count, not run count

#60 jaclyn-taroni closed 5 years ago
0
[MB part 3] Medulloblastoma figure notebook

#59 jaclyn-taroni closed 5 years ago
0
[MB part 2] Medulloblastoma differential expression analysis

#58 jaclyn-taroni closed 5 years ago
2
[DIPG part 2] DIPG analysis

#57 jaclyn-taroni closed 5 years ago
0
Add MCPcounter neutrophil estimate comparison for SLE data

#56 jaclyn-taroni closed 5 years ago
0
[MB part 1] Medulloblastoma cleaning and MultiPLIER

#55 jaclyn-taroni closed 5 years ago
0
Plot biological context, sample size evaluation results

#54 jaclyn-taroni closed 5 years ago
1
Pathway overlap between biological contexts

#53 jaclyn-taroni closed 5 years ago
0
Pathway separation

#52 jaclyn-taroni closed 5 years ago
0
Add repeats for training on different biological contexts

#51 jaclyn-taroni closed 5 years ago
0
[DIPG part 1] DIPG data cleaning and MultiPLIER

#50 jaclyn-taroni closed 5 years ago
0
Add biological context evaluations

#49 jaclyn-taroni closed 5 years ago
0
Add sample size 'sweep' evaluations

#48 jaclyn-taroni closed 5 years ago
0
Add shell script for subsampling recount2 -- different sample sizes

#47 jaclyn-taroni closed 5 years ago
0
Plot SLE B matrix PCA at different cut points

#46 jaclyn-taroni closed 5 years ago
0
Training on different biological contexts

#45 jaclyn-taroni closed 5 years ago
1
Add more libraries to Docker image

#44 jaclyn-taroni closed 5 years ago
2
Update notebook TOC in README

#43 jaclyn-taroni closed 5 years ago
2
Are MSigDB oncogenic pathways captured by the recount2 model?

#42 jaclyn-taroni closed 6 years ago
0
Pull git lfs files before compressing and uploading to figshare

#41 jaclyn-taroni closed 5 years ago
0
Pathway "separation" with increased sample size

#40 jaclyn-taroni closed 5 years ago
0
Training on different subsets of recount2

#39 jaclyn-taroni closed 5 years ago
1
What's the "pathway coverage" for pathways the models weren't supplied during training?

#38 jaclyn-taroni closed 5 years ago
1
Show SLE B matrix PCA at different AUC cut points

#37 jaclyn-taroni closed 5 years ago
0
Adding some details to README

#36 jaclyn-taroni closed 6 years ago
0
Fix recount2 link in README

#35 jaclyn-taroni closed 6 years ago
0
link to recount2 in Readme.md is wrong

#34 lzamparo closed 6 years ago
1
Add figshare DOI

#33 jaclyn-taroni closed 6 years ago
1
Update README

#32 jaclyn-taroni closed 6 years ago
0
Add glomeruli data download from greenelab/rheum-plier-data

#31 jaclyn-taroni closed 6 years ago
0
Update Docker image

#30 jaclyn-taroni closed 6 years ago
3
Add notebook for plotting selected multiplier LVs

#29 jaclyn-taroni closed 6 years ago
0
Add figure notebook + figures: AAV multitissue for selected LVs

#28 jaclyn-taroni closed 6 years ago
0
Adding figure notebook + figure: plasma cell box plots

#27 jaclyn-taroni closed 6 years ago
0
Add figure notebook + figure: SLE U plot

#26 jaclyn-taroni closed 6 years ago
0
Add figure notebook + figure: neutrophil scatterplots

#25 jaclyn-taroni closed 6 years ago
0
Tweaking heatmap figures

#24 jaclyn-taroni closed 6 years ago
0