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greenelab
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snorkeling
Extracting biomedical relationships from literature with Snorkel 🏊
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Added results for 17 v 26 lfs
#58
danich1
closed
6 years ago
0
Improved Generative Model Performance
#57
danich1
closed
6 years ago
1
Updating Discriminator Model Performance
#56
danich1
closed
6 years ago
1
Gen model evaluation - Mismatch fix
#55
danich1
closed
6 years ago
0
Snorkel upgrade to 0.7.0 beta
#54
danich1
closed
6 years ago
1
Co-occurence analysis with dataset
#53
danich1
closed
6 years ago
1
Added Data files and ROCs with pvalues.
#52
danich1
closed
6 years ago
0
Doc2vec Integration
#51
danich1
closed
6 years ago
0
Gen model calibration
#50
danich1
closed
6 years ago
0
Gen model calibration
#49
danich1
closed
6 years ago
0
Added Shuffled data and xlsx Tracking
#48
danich1
closed
6 years ago
0
Refactored code to efficiently run LSTM on cluster
#47
danich1
closed
6 years ago
0
Updated environment and added code to generate sentence-label-dev.xlsx
#46
danich1
closed
6 years ago
0
Updated sentence label file to 50k
#45
danich1
closed
6 years ago
0
Snorkel checkpoint 2
#44
danich1
closed
6 years ago
0
Added compression for disease-gene-pairs-association.csv.xz file
#43
danich1
closed
6 years ago
0
Snorkel Checkpoint - Modeling Label Functions
#42
danich1
closed
6 years ago
0
Added new stratification strategy
#41
danich1
closed
6 years ago
0
Sentence level benchmarking
#40
danich1
closed
6 years ago
0
Miscellaneous notes from the great snorkeling of 2018
#39
dhimmel
opened
6 years ago
3
Adding updated lstm results
#38
danich1
closed
6 years ago
3
Change log to logit
#37
danich1
closed
6 years ago
0
Updated Entity Level Prediction Module
#36
danich1
closed
6 years ago
3
Python3 upgrade
#35
danich1
closed
6 years ago
0
Notebook Organization and Entity Level prediction
#34
danich1
closed
6 years ago
0
Bug Fixes and code redesign
#33
danich1
closed
6 years ago
0
LR Model Results and Bug fixing
#32
danich1
closed
6 years ago
0
Adding prior probability calculation notebook
#31
danich1
closed
6 years ago
0
Adding notebook for fisher exact test
#30
danich1
closed
6 years ago
0
Updating the Repository with Bug Fixes and Stratified File Strategy
#29
danich1
closed
7 years ago
1
Verifying Experimental Analysis Design
#28
danich1
opened
7 years ago
1
Repo Clean up
#27
danich1
closed
7 years ago
0
Assessing term co-occurrence across sentences
#26
dhimmel
closed
6 years ago
2
Documenting the First Run for snorkeling
#25
danich1
closed
7 years ago
1
Adding Model Training/Analysis Notebooks
#24
danich1
closed
7 years ago
2
Data gen training
#23
danich1
closed
7 years ago
1
Extracting relationships from Hetionet v1.0
#22
dhimmel
closed
7 years ago
0
Data Insertion Update
#21
danich1
closed
7 years ago
0
Scaling Snorkeling To Handle Pubmed
#20
David-Durst
closed
7 years ago
3
Conda forge breaks lxml
#19
danich1
closed
7 years ago
2
Version upgrade
#18
danich1
closed
7 years ago
0
Version upgrade
#17
danich1
closed
7 years ago
1
Update numbskull
#16
dhimmel
closed
7 years ago
0
Version upgrades to environment
#15
danich1
closed
7 years ago
0
Minor changes to epilepsy report
#14
dhimmel
closed
7 years ago
1
Create epilepsy-associated genes gold standard
#13
dhimmel
closed
7 years ago
1
Expert snorkelers: cataloging related projects and snorkels
#12
dhimmel
opened
7 years ago
3
Convert bioconcepts2pubtator_offsets to bioC format
#11
danich1
closed
7 years ago
6
Extract epilepsy-associated genes trained using Hetionet v1.0 relationships
#10
danich1
closed
7 years ago
6
Gold standard of epilepsy-associated genes
#9
dhimmel
closed
7 years ago
1
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