grst single_cell_data_integration issues - Githubissues

grst / single_cell_data_integration

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switch to `highly_variable_genes` in all subprojects.

#20 grst closed 5 years ago
0
What T cells are dysfunctional, actually - and how to find out?

#19 grst opened 5 years ago
2
data normalization strategies

#18 grst closed 5 years ago
0
Use scrublet for doublet detection.

#17 grst closed 5 years ago
0
switch to gene symbols.

#16 grst closed 5 years ago
0
trajectory inference

#15 grst opened 5 years ago
1
CD8+ subtypes: exploratory analyses

#14 grst closed 5 years ago
0
assess batch effect removal tools

#13 grst closed 5 years ago
0
cell type annotations

#12 grst closed 5 years ago
12
dropSeqPipe configuration

#11 grst opened 5 years ago
4
single cell browser

#10 grst closed 5 years ago
1
SmartSeq2 pipeline

#9 grst opened 5 years ago
0
Raw data (FASTQ) alignment & quantification

#8 grst opened 5 years ago
5
Batch effect removal tools

#7 grst closed 5 years ago
4
RNA velocity

#6 grst opened 5 years ago
1
cleaning of individual datasets.

#5 grst closed 5 years ago
6
get raw data (FASTQ) and process using dropSeqPipe

#4 grst closed 5 years ago
7
Pipeline stages - overview

#3 grst closed 5 years ago
7
preprocessing at what point

#2 grst closed 5 years ago
3
gene identifier remapping

#1 grst closed 5 years ago
3
GWAS: associate cancer mutation with immune cell landscape

#21 grst opened 5 years ago
0