Receive error message when quitting RNAStructViz

gtDMMB / RNAStructViz

Visualization, comparison, and analysis of RNA secondary structures via a cross-platform GUI

https://github.com/gtDMMB/RNAStructViz/wiki

GNU General Public License v3.0

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Receive error message when quitting RNAStructViz #34

Closed irishryoon closed 5 years ago

irishryoon commented 5 years ago

When I close RNAStructViz, I receive an error message saying "RNAStructViz quit unexpectedly". My terminal has the following output:

RNAStructViz(16926,0x1109cd5c0) malloc: *** error for object 0x73677261: pointer being freed was not allocated RNAStructViz(16926,0x1109cd5c0) malloc: *** set a breakpoint in malloc_error_break to debug Abort trap: 6

This is not an issue that is stopping me from using RNAStructViz. However, it is something to take care of.

maxieds commented 5 years ago

@irishryoon Can you give me a step-by-step set of instructions for how to reproduce this error? What exactly did you click to get the error message?

maxieds commented 5 years ago

@irishryoon Also, does everything else (including the new radial layout viewer) appear to work on your Mac install?

irishryoon commented 5 years ago

@maxieds The new radial layout viewer works fine. Here is how I got this error:

I used RNAStructViz to visualize secondary structures as usual. I then clicked on the red round button on the top left corner of the RNAStructViz window (shown below). I then receive an error message (very bottom picture).

Note: When I open RNAStructViz and close the window (without visualizing any arc diagrams), then I don't receive the error. It seems like I receive the error only after using RNAStructViz to visualize arc diagrams.

maxieds commented 5 years ago

@irishryoon Can you be even more specific? And post exact files you use to generate the error? I'm not seeing it from my testing on Linux.

irishryoon commented 5 years ago

@maxieds

Sure! Here are screenshots of exactly what I clicked.

I loaded a ct file. For this example, I used the ct file in the following zip file. (However, I receive this error independent of what file I use)

added_123456781221.ct.zip

I then clicked on the red box "diagram" to visualize the secondary structure.

I then clicked on the red button on the top left corner (inside the red box) to close the diagram window.

I then clicked on the red button on the top left corner (inside the red box) to close RNAStructViz window.

I then receive the error posted in this issue.

maxieds commented 5 years ago

@irishryoon Nope. Still cannot reproduce it on Linux. Thank you very much as usual though for the the thorough step-by-step instructions. I will try to see if I can get the error reproduced with the Mac OSX remote box over VNC in a couple of days.

What version are you running?

$ RNAStructViz --about

irishryoon commented 5 years ago

@maxieds No problem! I'm running v1.4.7-testing. Here is the full output when I run the command you posted.

==== RNAStructViz v1.4.7-testing -- CT File Viewer and Structure Comparison Tool ====

ABOUT THIS APPLICATION:

User Manual: https://github.com/gtDMMB/RNAStructViz/wiki Git Revision: () [] Revision Date: FLTK Library Version: 1.4.0 (API #10400) Compile-Time FLTK-Config: /usr/local/Cellar/fltkwithcairo/1.4.x-r13107_2/bin/fltk-config Cairo Library Version: 1.16.0 Target Platform: Darwin (18.2.0) [x86_64] @ macbook-pro-6.lan Local Build Time: Wed Mar 20 16:35:34 2019

BUG REPORT INFORMATION: Please include a screenshot along with this information in any bug report you submit. New issues with the application can be submitted at https://github.com/gtDMMB/RNAStructViz/issues.

maxieds commented 5 years ago

@irishryoon Ok, the version is the problem. I fixed this error last week. Please re-run:

$ brew uninstall rnastructviz
$ brew install gtDMMB/core/rnastructviz

irishryoon commented 5 years ago

@maxieds Works now! Thanks Maxie