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guma44
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GEOparse
Python library to access Gene Expression Omnibus Database (GEO)
BSD 3-Clause "New" or "Revised" License
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NCBI GEO FTP has changed their URL structures AGAIN
#35
halioui
closed
6 years ago
2
Parse data table
#34
halioui
closed
6 years ago
1
Fixed the FTP link.
#33
simonvh
closed
6 years ago
1
fix #31
#32
eric6356
closed
6 years ago
0
wrong name in parse_GSE
#31
eric6356
closed
6 years ago
2
BUG: cannot " GEOparse.get_GEO(filepath= path)" On windows
#30
Dashing-Daniel-Li
closed
7 years ago
2
silent mode not working.
#29
ppanteliadis
closed
7 years ago
4
Possibility to download all GEO data locally.
#28
bgriffen
opened
7 years ago
1
check for converted sra-s
#27
antonkulaga
opened
7 years ago
1
fastq-dump parameters are not optimal
#26
antonkulaga
closed
7 years ago
3
email is optional
#25
antonkulaga
closed
7 years ago
3
more meaningful error in gsm.download_supplementary_files
#24
antonkulaga
closed
7 years ago
9
In parse_GDS_columns(), unknown subset_types discarded
#23
n1mus
closed
7 years ago
1
returning pathes by download supplementary files
#22
antonkulaga
closed
7 years ago
1
biopython requirement
#21
antonkulaga
closed
7 years ago
2
no columns at GSE
#20
antonkulaga
closed
7 years ago
3
get_GEO(... silent=True) is NOT silent
#19
dtenenba
closed
7 years ago
8
Httpsfix and how logic
#18
miguelroboso
closed
7 years ago
0
fixed typo
#17
simonvh
closed
7 years ago
1
Error with GSE52666
#16
KwatMDPhD
closed
7 years ago
4
Some GEO platforms have errors in their annotations and this edit gets around 2 of those platforms
#15
KwatMDPhD
closed
7 years ago
1
Reporting issues with loading the following 2 datasets
#14
KwatMDPhD
closed
7 years ago
5
Rename README.rst to README.md
#13
KwatMDPhD
closed
7 years ago
1
Update setup.py
#12
KwatMDPhD
closed
7 years ago
1
Enhance documentation with pre-requisite python module (pandas)
#11
hariesramdhani
closed
7 years ago
2
Make compatible tutorial for Python3
#10
hariesramdhani
closed
7 years ago
0
Bugfix: some titles contain ; characters, should be replaced with _
#9
simonvh
closed
7 years ago
3
Python 3 Compatibility
#8
tychobismeijer
closed
7 years ago
6
How can I get gsm-gpl relation in multi-gpls gse.
#7
yong27
closed
7 years ago
2
Automatically generate pheno data
#6
guma44
closed
7 years ago
1
Illegal filenames and no filtering of user input from GEO to create the filenames
#5
theselim
closed
7 years ago
3
python 2.7 only?
#4
ruxi
closed
7 years ago
1
V0.1.7
#3
guma44
closed
8 years ago
0
Better support for HTS accessions
#2
simonvh
closed
8 years ago
3
stderr.write missing
#1
yxngl
closed
8 years ago
1
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