gusevlab fusion_twas issues

gusevlab / fusion_twas

methods for functional summary-based imputation

http://gusevlab.org/projects/fusion/

GNU General Public License v3.0

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issues

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more of a doubt on input gwas

#70 nenduru1 opened 2 months ago
0
GEUV.compute_weights.sh

#69 alyssacl closed 3 months ago
1
"\--sumstats" is not a valid option, or does not support an argument

#68 minmin4003 opened 6 months ago
0
Compute time with large LD reference panel

#67 Chris-Wills opened 7 months ago
0
Expression Prediction

#66 jjiang92292 opened 7 months ago
0
LASSO output did not exist

#65 luzengAdelaide opened 9 months ago
0
How do I integrate FUSION results from multiple organizations

#64 zbh2399669 opened 9 months ago
0
missing GWAS Z-scores that could not be imputed, skipping this gene.

#63 Wanjie-Feng opened 10 months ago
0
Single SNP Weights Break FUSION.post_process.R

#62 travismize opened 1 year ago
0
coloc analysis still broken, even on earlier versions

#61 Chris-Wills opened 1 year ago
1
Trying to create own weights : error with TMP

#60 ChristianDina opened 1 year ago
11
A question about drawing

#59 zbh2399669 opened 1 year ago
1
issue with FUSION.post_process.R --omnibus

#58 yangrousong opened 1 year ago
0
COLOC I am getting results with 'NA'

#57 vherrera606 closed 1 year ago
2
LD reference pannel

#56 guanjw8891 opened 1 year ago
0
Using FUSION for Individual-level predictors

#55 jianvhuang closed 1 year ago
2
the same data in LDREF and GWAS summary data

#54 yu-zhang-oYo opened 1 year ago
0
Failed to download the reference panel!

#53 AaronHY closed 1 year ago
3
Error in Fusion "coloc"

#52 MIAO0916 opened 1 year ago
6
LASSO output did not exist

#51 MaudLau closed 1 year ago
2
Error in check_dataset(d = dataset1, 1) :

#50 MIAO0916 closed 1 year ago
2
Error in layout(lay.gwas): layout matrix must contain at least one reference to each of the values {1 ... 2} Execution halted

#49 rodrigoduarte88 closed 1 year ago
1
QTL scores values to FUSION model format

#48 fernandogs97 closed 2 years ago
1
No overlapping GWAS Z-score

#47 corunesa opened 2 years ago
4
linux or window system to run FUSION.test.R?

#46 wangrenxi760201 closed 2 years ago
1
Perform TWAS with GWAS data from non-European ancestry

#45 baike687 closed 2 years ago
1
error in FUSION.assoc_test.R step (Error in out.tbl$EQTL.ID[w] <- names(topeqtl) : replacement has length zero)

#44 Fei-Yang666 closed 2 years ago
3
perform TWAS using weights of GTEx(version 8)

#43 biolyn closed 1 year ago
4
What is the best way to normalise RNA-seq data when running FUSION.compute_weights.R?

#42 Fei-Yang666 closed 2 years ago
2
MHC locus selection

#41 saramonteiromartins closed 2 years ago
1
Unable to run an sCCA+ACAT TWAS

#40 rodrigoduarte88 closed 3 years ago
1
Add covariates when computing weigths

#39 PierreSolomon closed 3 years ago
1
Problem of Fusion "coloc"

#38 zhangcc89claire closed 3 years ago
13
Best model specified as enet, yet all values in wgt.matrix are reported as 0

#37 travismize closed 3 years ago
1
Understanding top1 output in wgt.matrix

#36 travismize closed 3 years ago
1
File format of GTEx.v7.meta.id and GTEx.v7.meta.covar

#35 travismize closed 3 years ago
1
What is the best way to create Plink files for FUSION.compute_weights.R?

#34 montenegrina closed 3 years ago
5
GEUV.compute_weights.sh -- $PRE_GEXP.ID

#33 xukaili closed 3 years ago
2
GRCh38

#32 jjfarrell closed 3 years ago
2
Error in wgt.matrix[qc$flip, ] : incorrect number of dimensions (a solution)

#31 hbliu closed 3 years ago
1
Error in post-process FUSION

#30 SalimMegat closed 3 years ago
2
All genes skipped when computing weights

#29 kmfunder closed 4 years ago
2
Questions for Custom LD Reference Data

#28 maegsul closed 4 years ago
3
how to impute Z-scores for the missing SNPs?

#27 montenegrina closed 4 years ago
1
Uncertainty estimate?

#26 carbocation closed 4 years ago
1
the beta of model top1

#25 Lee211 closed 4 years ago
3
Is beta T or F in the model top1 for calculating gene weights?

#24 Lee211 closed 4 years ago
1
Getting weights for all genes

#23 xsun1229 closed 4 years ago
3
No *.RDat output generate for compute weights script

#22 Bochao1 closed 4 years ago
1
issue with FUSION.post_process.R --omnibus

#21 liangyanabcd closed 4 years ago
2