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gymreklab
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chips
Simulation tool for ChIP- and other -seq experiments
GNU General Public License v3.0
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Conda installation fails
#67
ivargr
closed
1 year ago
1
How many reads?
#66
ivargr
closed
1 year ago
2
Segmentation Fault when simulating WCE
#65
ntanmayee
closed
1 year ago
1
Exception std::out_of_range during simreads
#64
olegs
closed
3 years ago
3
Problem building chips - zlib not found
#63
olegs
closed
3 years ago
1
Adding support for region in learn
#62
gymreklab
closed
3 years ago
0
Adding benchmarking to chipulate and ischip
#61
gymreklab
closed
3 years ago
0
added dupnum to read ids
#60
gymreklab
closed
3 years ago
0
renaming code directory to lib to avoid osx compile issue
#59
gymreklab
closed
3 years ago
0
Updating snakemake workflows to use more methods
#58
gymreklab
closed
3 years ago
0
Updated CMakeLists for building packages
#57
mlamkin7
closed
4 years ago
0
Update to Cmake
#56
gymreklab
closed
4 years ago
0
Updating to cmake
#55
gymreklab
closed
4 years ago
0
Updated sequencer to have PCR and library constructor
#54
mlamkin7
closed
4 years ago
2
Project status
#53
alnfedorov
closed
3 years ago
1
Merge Release
#52
mlamkin7
closed
4 years ago
0
fixed a bug in sequencer
#51
Pandaman-Ryan
closed
4 years ago
0
fixed a bug in model reading
#50
Pandaman-Ryan
closed
4 years ago
0
bug fixed: now allows len(read) > len(frag)
#49
Pandaman-Ryan
closed
4 years ago
1
Fig2 params readnum
#48
gymreklab
closed
4 years ago
0
Updated figures and Metrics
#47
mlamkin7
closed
4 years ago
0
Running WCE on high read lengths
#46
mlamkin7
closed
4 years ago
0
Readlen, pcr, mean_frag_len snakefiles
#45
mlamkin7
closed
4 years ago
0
time of replication
#44
rzzli
closed
4 years ago
2
[fixed] multi-threading random seeds/small contigs
#43
Pandaman-Ryan
closed
5 years ago
0
Create LICENSE
#42
gymreklab
closed
5 years ago
0
Running with several different seeds
#41
avilella
closed
5 years ago
5
map error running simreads
#40
avilella
closed
5 years ago
3
Update README.md
#39
rzzli
closed
5 years ago
1
Updated readme
#38
Pandaman-Ryan
closed
5 years ago
0
Fixed compile error
#37
mlamkin7
closed
5 years ago
0
updated name from chipmunk to tulip
#36
mlamkin7
closed
5 years ago
0
update method-sim-implementation
#35
Pandaman-Ryan
closed
5 years ago
0
test
#34
goren-lab
closed
5 years ago
0
Learn implementation methods
#33
mlamkin7
closed
5 years ago
0
Update method part
#32
Pandaman-Ryan
closed
5 years ago
0
fixed a minor bug
#31
Pandaman-Ryan
closed
5 years ago
0
Mini update on readme for flagged duplicates
#30
mlamkin7
closed
5 years ago
0
create func rescale
#29
Pandaman-Ryan
closed
5 years ago
0
fixed a bug in learn-frag-paired
#28
Pandaman-Ryan
closed
5 years ago
0
solved merge conflicts
#27
Pandaman-Ryan
closed
5 years ago
0
Changing peak scoring and make learn consider fragments rather than peaks
#26
gymreklab
closed
5 years ago
0
changing pulldown logic. moving PCR
#25
gymreklab
closed
5 years ago
0
implemented recompute f
#24
gymreklab
closed
5 years ago
0
Simulate exact read numbers
#23
gymreklab
closed
5 years ago
0
fixed negative values for whole genome
#22
mlamkin7
closed
5 years ago
0
Check and remove existing files / check the existence of input path
#21
Pandaman-Ryan
closed
5 years ago
0
Solved the segfault issue in read comparison
#20
Pandaman-Ryan
closed
5 years ago
0
filtered ummapped reads
#19
Pandaman-Ryan
closed
5 years ago
0
Update single-end and pcr in method
#18
Pandaman-Ryan
closed
5 years ago
0
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