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gyorilab
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mira
MIRA modeling framework
BSD 2-Clause "Simplified" License
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Pydantic version conflict when installing MIRA with `biomodels` package
#357
liunelson
opened
2 weeks ago
0
The Stratify REST API endpoint is missing the `param_renaming_uses_strata_names` argument
#356
liunelson
opened
2 weeks ago
0
Generate description and context based on key and stratum for stratified parameters
#355
nanglo123
opened
2 weeks ago
0
Add parameter id to amr export if parameter display name doesn't exist
#354
nanglo123
closed
2 weeks ago
1
Missing parameter `name` in `template_model_to_petrinet_json` export
#353
liunelson
closed
2 weeks ago
0
`set_parameters` only set value of parameters that exist already in the template model
#352
liunelson
opened
3 weeks ago
0
Inconsistency in the structure of `param_dict`
#351
liunelson
opened
3 weeks ago
2
Add updated notebooks and exports for 2024.08 scenarios
#350
bgyori
closed
1 month ago
0
Change new transition naming upon stratification
#349
bgyori
closed
1 month ago
0
Duplicated template names after stratification
#348
mwdchang
closed
1 month ago
0
Implement new templates to model metabolism
#347
bgyori
closed
1 month ago
0
grouped natural conversion class and test and schema
#346
augeorge
closed
1 month ago
5
Feature request: GroupedNaturalConversion
#345
djinnome
closed
1 month ago
0
Add resources to dkg
#344
nanglo123
closed
1 month ago
0
Adjust test that are affected by the sympy 1.13 update
#343
nanglo123
closed
2 months ago
0
Extend DKG Instance
#342
nanglo123
closed
2 months ago
0
[BUG]: Some annotations are missed by `template_model_from_amr_json`
#341
liunelson
closed
2 months ago
1
Fix serialization for datetime
#340
nanglo123
closed
2 months ago
0
[BUG]: Cannot serialize template model that has datetime in annotations
#339
liunelson
closed
2 months ago
0
Rename templates during stratification
#338
bgyori
closed
2 months ago
0
Change link for budyko-sellers decapode example
#337
nanglo123
closed
3 months ago
0
"Stratify" is not generating unique template names
#336
liunelson
closed
2 months ago
1
Implement model composition
#335
nanglo123
closed
2 months ago
0
Fix dkg viz edge naming
#334
nanglo123
closed
3 months ago
0
Add visualization for DKG relations
#333
nanglo123
closed
3 months ago
0
Reimplement stratification logic for parameter consistency
#332
bgyori
closed
3 months ago
0
[BUG] Unexpected Stratify behaviour when applied more than once
#331
liunelson
closed
3 months ago
3
Fix multiple stratification of templates with excluded concepts
#330
bgyori
closed
4 months ago
0
[BUG] Some templates are duplicated during stratification
#329
liunelson
closed
4 months ago
0
Add support for sbml qual models
#328
nanglo123
closed
4 months ago
0
Add control variables to the mapping of parameters for a MIRA template model ingested from a Vensim model
#327
nanglo123
closed
5 months ago
0
Add evaluation scenario 3 notebook and model
#326
bgyori
closed
5 months ago
1
Adding scenario 3 notebook and model
#325
sabinala
closed
5 months ago
1
Eval sc1 initials
#324
kkaris
closed
5 months ago
0
Evaluation scenario 2
#323
bgyori
closed
5 months ago
0
creating scenario 3 notebook
#322
sabinala
closed
5 months ago
1
Create Notebook for evaluation2024.03 epi_scenario_1 model b
#321
nanglo123
closed
5 months ago
0
Update way in which we identify controllers for rate laws when importing from Vensim
#320
nanglo123
closed
5 months ago
0
Update evaluation 2024.03 epi scenario 4 notebook
#319
nanglo123
closed
5 months ago
0
Move evaluation notebooks into dedicated folders
#318
bgyori
closed
5 months ago
0
Handle superscripts in expressions
#317
bgyori
closed
5 months ago
0
New features in rate law settings and ODE simulation + photosynthesis model
#316
bgyori
closed
5 months ago
0
Evaluation epi scenario 1 example model
#315
kkaris
closed
5 months ago
0
Scenario5
#314
bgyori
closed
5 months ago
0
Fix observable handling in stock and flow
#313
bgyori
closed
5 months ago
0
Observables disappear from stockflow and regnet models
#312
sabinala
closed
5 months ago
3
Comparison colors
#311
kkaris
closed
5 months ago
0
Update code in notebooks for LLM ingestion
#310
nanglo123
closed
5 months ago
0
Handle float and int in expression constructor
#309
bgyori
closed
5 months ago
0
Fix sign on intrinsic decay for regnet AMR
#308
bgyori
closed
5 months ago
1
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