Some of the PDB components fails over secured HTTPS while works locally over insecure HTTP

[TomasKulhanek]

https://portal.west-life.eu/virtualfolder/index-dataset.html E.g. when entering 3isw, the PDB redo fails: Error: fail response the PDB Residue interaction fails: Error: loading API data While the same at local installation of Westlife VM http://localhost/virtualfolder/index-dataset.html works

[TomasKulhanek]

Firefox from version 23 and other browsers may block unsecure AJAX calls (over HTTP) from sites which were initiated from secured connection (over HTTPS). Thus an obvious fix to get AJAX calls is from '//ebi.ac.uk/...' not from 'http://ebi.ac.uk' or whatever. This were fixed in virtualfolder and seems to be present in PDB components. However these components fails because subsequent AJAX query is blocked:

• PDB-REDO component initiates request to www.cmbi.ru.nl, browser refuses to connect to it: www.cmbi.ru.nl uses an invalid security certificate.The certificate is not trusted because it was signed using a signature algorithm that was disabled because that algorithm is not secure.The certificate is only valid for www.cmbi.umcn.nlError code: SEC_ERROR_CERT_SIGNATURE_ALGORITHM_DISABLED

• PDB-Residue interaction initiates request to www.mrc-lmb.cam.ac.uk, browser again refuses to connect to it: www.mrc-lmb.cam.ac.uk uses an invalid security certificate.The certificate is not trusted because it is self-signed.The certificate is not valid for the name www.mrc-lmb.cam.ac.uk.The certificate expired on 21 June 2016 at 15:07. The current time is 5 May 2017 at 14:32.Error code: SEC_ERROR_UNKNOWN_ISSUER

[TomasKulhanek]

• [x] check PDB-3D complex ( HTTP HEAD to shmoo.weizmann.ac.il/elevy/3dcomplexV5/dataV5/json_v3/${pdbid}.json will return 200 if 3d data exists, otherwise 404 Not Found) and enable/disable component
• [x] PDB-REDO component from ebi.ac.uk seems to still use old URL www.cmbi.ru.nl instead of pdb-redo.eu, thus failing on portal
• [x] http://pdb-redo.eu/db/${item}/pdbe.json redirects to https which cause CORS error in browser - either do not redirect HTTP to HTTPS ?or CORS should be changed in portal.west-life.eu or ebi.ac.uk?
• [x] PDB Residue Interation component - Rajini - still fails on portal due to invalid certificate on www.mrc-lmb.cam.ac.uk