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hackseq / 2016_project_6

Inferring sex chromosome and autosomal ploidy in NGS data
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1000 genomes SV calls #12

Closed whitneywhitford closed 7 years ago

whitneywhitford commented 7 years ago

1000 genomes SV calls for phase 3 ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/

https://github.com/hackseq/2016_project_6/blob/master/Files/1000genomes_CNVs/1kGchr19_24samples_CNV.vcf https://github.com/hackseq/2016_project_6/blob/master/Files/1000genomes_CNVs/1kGchrX_24samples_CNV.vcf https://github.com/hackseq/2016_project_6/blob/master/Files/1000genomes_CNVs/1kGchrY_24samples_CNV.vcf

whitneywhitford commented 7 years ago

Expanded SV calls of phase 3 as described http://www.nature.com/nature/journal/v526/n7571/full/nature15394.html#extended-data

Found at ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase3/integrated_sv_map

vcf file https://github.com/hackseq/2016_project_6/blob/master/Files/1000genomes_CNVs/SudmantchrXY19SV_24samples.vcf

whitneywhitford commented 7 years ago

These are in GRCh37, so this is being shelved