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hackseq / 2016_project_6

Inferring sex chromosome and autosomal ploidy in NGS data
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Plot read mapping quality along chromosome X and Y #3

Open BrunoGrandePhD opened 8 years ago

BrunoGrandePhD commented 8 years ago

I will run QualiMap in addition to simply counting the mapping qualities per bin (size = 10,000).

mathbionerd commented 8 years ago

QualiMap may not be great for our purposes, so next attempt will be to write code to add an option to compute quality in the python script.