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hackseq / 2016_project_6

Inferring sex chromosome and autosomal ploidy in NGS data
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Create conda environment #6

Closed BrunoGrandePhD closed 7 years ago

thw17 commented 7 years ago

I've installed anaconda (Python 2.7) to /hackathon/Hackathon_Project_6. You can add it to your environment with the command:

export PATH=/hackathon/Hackathon_Project_6/anaconda2/bin:$PATH

I've created an environment for the group (Python 2.7) called xyploidy. If anaconda is loaded in your environment (you can check with the command which conda), you can activate this environment with:

source activate xyploidy

and deactivate it (once activated) with:

source deactivate xyploidy

thw17 commented 7 years ago

I've added a bunch of programs and packages to the environment xyploidy. I've listed them below (you can also see them in the file xyploidy_environment.yml in the /hackathon/Hackathon_Project_6 directory). Let me know if you want anything else installed.

name: xyploidy channels: !!python/tuple