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hackseq
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vasco
Visualization of single cell RNA-seq data from tens of thousands of cells in real time
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cannot access CellRanger Tutorial PDF (forbidden/permission denied)
#47
gleparc
opened
7 years ago
1
Project updates?
#46
gracezheng
opened
7 years ago
3
add license file
#45
szhan
opened
7 years ago
1
definition of user input data
#44
szhan
closed
7 years ago
1
integration with gene ontology
#43
szhan
opened
7 years ago
0
status update
#42
gracezheng
opened
7 years ago
10
select new groups?
#41
gracezheng
closed
5 years ago
4
differential gene expression table?
#40
gracezheng
closed
5 years ago
2
data upload exception handling
#39
esmason
opened
7 years ago
1
test data upload with different files
#38
esmason
opened
7 years ago
3
Create new group by selecting bug ~ln 160 in server.R
#37
esmason
closed
7 years ago
4
Web page
#36
oganm
closed
7 years ago
4
Make it so that table has 2 decimal places
#35
csiu
closed
7 years ago
0
Adjust size of box plot @explore when pick 4 genes ... why does box plot not take up full page
#34
csiu
opened
7 years ago
0
Describe what the input data structure is
#33
csiu
opened
7 years ago
0
fix box plot margins @geneExpr/visualize @Compare page
#32
csiu
closed
7 years ago
1
Add this to summary page
#31
csiu
closed
7 years ago
0
Remove bar chart @Summary page
#30
csiu
closed
7 years ago
0
Center tSNE main plot @Summary page
#29
csiu
closed
7 years ago
0
Publish in F1000?
#28
csiu
opened
7 years ago
0
App name? Update header + short description
#27
csiu
closed
7 years ago
0
Adjust side panel labels/text @geneExpr and @Compare
#26
csiu
closed
7 years ago
0
Rename tabs
#25
csiu
closed
7 years ago
0
Rename plot labels: tSNE_1 -> TSNE 1
#24
csiu
closed
7 years ago
0
Selection summary scatter plot should be a new colour
#23
esmason
opened
7 years ago
0
Theme
#22
oganm
closed
7 years ago
0
Add geneExpr advanced options
#21
csiu
opened
7 years ago
1
Make it so that 2-sided slider can specify the min and max colour on geneExpr scatter plot
#20
csiu
closed
7 years ago
0
geneExpr box plot of user selected gene expression by cluster
#19
csiu
opened
7 years ago
0
annotate cell type by user selection
#18
csiu
closed
7 years ago
0
multisample comparison e.g. at different time points
#17
csiu
opened
7 years ago
0
make it so that if no genes are selected at the geneExpr, there will not be a cryptic error
#16
csiu
closed
7 years ago
0
be able to select limited number of Compare genes
#15
csiu
opened
7 years ago
1
select gene from Compare table and visualize box plot of expression
#14
csiu
closed
7 years ago
1
remove output$debug
#13
csiu
closed
7 years ago
0
Make it so that the 2 group scatter plot and bar chart of cell count frequency plot of each group is displayed on the Compare page
#12
csiu
closed
7 years ago
1
Make it so that the 2 group scatter plot on the Compare page uses colours not seen before
#11
csiu
closed
7 years ago
2
Make it so that .... from Compare table, select gene, auto update geneExpr scatter plot
#10
csiu
closed
7 years ago
0
Add histogram on geneExpr page
#9
csiu
closed
7 years ago
1
Organize "Compare" page
#8
csiu
closed
7 years ago
1
Demo single cell analysis
#7
csiu
closed
7 years ago
0
Change "freq" to "number of cells" on bar chart
#6
csiu
closed
7 years ago
0
functionality for users to add their own data
#5
csiu
opened
7 years ago
0
Make it so that cluster ID is unknown and the code will not break
#4
csiu
closed
7 years ago
1
Second selection
#3
oganm
closed
7 years ago
1
save differential gene expression
#2
bw2
closed
7 years ago
2
Welcome to the single cell visualization team!
#1
gracezheng
closed
7 years ago
15