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hahnlab
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CAGEE
Computational Analysis of Gene Expression Evolution
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How to handle gene duplication and loss properly
#35
iacopogentile
closed
1 month ago
0
how to generate gene expression file
#32
yuzhenpeng
closed
1 month ago
0
Running CAGEE produces only the results.txt file and not the other output files
#29
Squigley18
opened
3 months ago
1
Error when compiling CAGEE v1.1.1 from source code
#28
zy041225
closed
2 months ago
2
replicates in configuration file
#26
mtswanson2017
closed
2 months ago
1
count_all_changes reports only credible changes
#25
VenomEvoDevo
closed
8 months ago
0
Multiple tissue type output
#24
Squigley18
closed
1 year ago
6
Unknown option: replicate_map
#23
poojasingh09
closed
1 year ago
3
"WARNING: No math library available, calculations may be slow"
#22
emm-miller
closed
2 months ago
1
Docker image
#21
rresendepinto
closed
1 year ago
2
Questions regarding implementation of CAGEE
#19
agneeshbarua
closed
1 year ago
2
Minimum number of species
#17
juliayork
closed
1 year ago
0
Emergent compilation errors
#15
jtourig
closed
2 years ago
1
Sigma bias
#14
jasonbertram
closed
2 years ago
0
All-duplicate values within reconstructed internal nodes
#13
jtourig
closed
2 years ago
0
Prior sensitivity
#12
jasonbertram
closed
1 year ago
1
`VectorPos_bounds` error
#11
jtourig
closed
2 years ago
1
Installation can't find shared libraries after `make install`
#10
jtourig
closed
2 years ago
2
Eigen error when running inference on simulation
#9
jtourig
closed
1 year ago
3
`-c` option does not correspond to `--cores` as described in help output
#8
jtourig
closed
2 years ago
4
Fix priors
#7
benfulton
closed
1 year ago
0
Gamma root dist
#6
benfulton
closed
3 years ago
0
Modify optimizer to run BFGS rather than Nelder-Mead
#5
benfulton
closed
2 years ago
0
Create a CMake project for CAGEE
#4
benfulton
closed
2 years ago
0
Allow simulation of multiple sigma values
#3
benfulton
closed
2 years ago
0
Cuda build
#2
benfulton
closed
3 years ago
0
Windows build
#1
benfulton
closed
3 years ago
0