I can understand that in the genotype file (geuvadis.snps.dosage.txt) 0 represents the reference genotype, 1 represents the heterozygous genotype, and 2 represents the mutant genotype. However, in addition to the above three genotypes, my genotype file also contains missing genotypes (NN). How should the missing genotypes be encoded?
Hi Prof. Hae Kyung Im,
I can understand that in the genotype file (geuvadis.snps.dosage.txt) 0 represents the reference genotype, 1 represents the heterozygous genotype, and 2 represents the mutant genotype. However, in addition to the above three genotypes, my genotype file also contains missing genotypes (NN). How should the missing genotypes be encoded?