Setting the Biomart query to Ensembl 75

hammerlab / immuno

Use somatic mutations to choose a personalized cancer vaccine (tumor-specific immunogenic peptides)

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Setting the Biomart query to Ensembl 75 #147

Closed tavinathanson closed 10 years ago

tavinathanson commented 10 years ago

The Biomart query was not in line with Ensembl 75, so the transcripts didn't line up with the rest of the data. (Changing test data values didn't help.)

It took me a while to figure out that it was possible to query the Biomart archive.

tavinathanson commented 10 years ago

It would certainly be better to explicitly call this out rather than having it hidden in the URL, but I figured I'd await pyensembl before doing anything interesting.

iskandr commented 10 years ago

Simple enough :-)

I'll work on porting things over to pyensembl next week, once the MSKCC symposium is done.