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hammerlab / immuno

Use somatic mutations to choose a personalized cancer vaccine (tumor-specific immunogenic peptides)
Apache License 2.0
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Enable setting fixed sliding window #80

Open ihodes opened 10 years ago

ihodes commented 10 years ago

This window should be an n-mer (default 31mer) peptide subsequence with the mutation at least m (default 5) from the boundary of the window. This should, with the binding score threshold, output the peptides subsequence (one per peptide) with the best candidate epitopes touching the mutation.

tavinathanson commented 9 years ago

Note to self: there is a command line flag for the 5 number.