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hammerlab
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prohlatype
Probabilistic HLA typing
Apache License 2.0
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Drop suffixed alleles
#101
rleonid
closed
7 years ago
0
Merge cells lower float accuracy
#100
rleonid
closed
7 years ago
0
Filter power
#99
rleonid
closed
6 years ago
2
Single alleleable
#98
rleonid
closed
7 years ago
1
Function of alleles
#97
rleonid
closed
7 years ago
1
Implement banded pass
#96
rleonid
closed
7 years ago
1
Check for reverse complement
#95
rleonid
closed
7 years ago
0
Use custom fixed width bitvectors for allele sets
#94
rleonid
closed
7 years ago
0
Purge old graph alignment logic
#93
rleonid
closed
7 years ago
1
Parametric phmm
#92
rleonid
closed
7 years ago
1
Possible mutations
#91
rleonid
opened
7 years ago
2
Kmer table doesn't scale.
#90
rleonid
closed
7 years ago
2
Specifics
#89
rleonid
closed
7 years ago
0
Specific read
#88
rleonid
closed
7 years ago
0
Adding padding from reference haplotypes.
#87
rleonid
opened
7 years ago
0
Careful read tracking through pipeline
#86
rleonid
closed
7 years ago
1
Queued neighbors
#85
rleonid
closed
7 years ago
0
Travis test new cfstream build
#84
rleonid
closed
7 years ago
1
Write errors to input named file
#83
rleonid
closed
7 years ago
0
Typing errors log should be named by input
#82
rleonid
closed
7 years ago
0
Strand neutral
#81
rleonid
closed
7 years ago
3
Reverse complement Kmer encoding calculation
#80
rleonid
closed
7 years ago
1
Array <-> List transforms
#79
rleonid
closed
6 years ago
1
Latest imgt
#78
rleonid
closed
7 years ago
0
Biological kmers
#77
rleonid
closed
7 years ago
0
Consider outputting results in HML
#76
hammer
opened
7 years ago
0
Version depends
#75
rleonid
closed
7 years ago
0
Semi mutable
#74
rleonid
closed
7 years ago
0
Use an Int64 backed bitset implementation
#73
rleonid
closed
7 years ago
0
Use batteries
#72
rleonid
closed
7 years ago
1
Investigate alternative allele set data structures
#71
rleonid
closed
7 years ago
0
Benchmark newly filtered UPenn data
#70
rleonid
closed
7 years ago
3
Benchmark prohlatype w/ performance improvements
#69
hammer
closed
7 years ago
1
Faster
#68
rleonid
closed
7 years ago
2
Construct canonical filtered read data set so that I can start tuning increasing accuracy in known cases
#67
hammer
closed
7 years ago
1
Fix CI by fixing dependent library versions (ex. biocaml)
#66
hammer
closed
7 years ago
0
Normalize the quality
#65
rleonid
closed
7 years ago
1
Neighbors
#64
rleonid
closed
7 years ago
1
Do not preference the default strand
#63
rleonid
closed
7 years ago
0
Ending story
#62
rleonid
closed
7 years ago
1
Try out on long reads
#61
hammer
opened
7 years ago
1
Edit distance
#60
rleonid
closed
7 years ago
2
Add a width option to align2fasta
#59
rleonid
closed
6 years ago
1
Align to fasta
#58
rleonid
closed
7 years ago
0
Add back_to_fasta utility
#57
rleonid
closed
7 years ago
0
Split up the test environment
#56
rleonid
closed
7 years ago
0
Add test coverage
#55
rleonid
closed
7 years ago
0
Use exon edit distance for allele similarity
#54
rleonid
closed
7 years ago
1
Splice variants in merging graphs
#53
rleonid
opened
7 years ago
0
Add code coverage
#52
rleonid
closed
7 years ago
0
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