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hartleys / JunctionSeq

The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generation, high-throughput RNA-Seq experiments.
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JunctionSeq

> v1.5.4 (Revised Thu Mar 30 17:09:17 EDT 2017)

Help, documentation, and the most recent release of JunctionSeq is available on the JunctionSeq github page.

You can cite the JunctionSeq methods paper, now published in Nucleic Acids Research:

Hartley SW, Mullikin JC. [Detection and visualization of differential splicing in RNA-Seq data with JunctionSeq](http://nar.oxfordjournals.org/content/early/2016/06/07/nar.gkw501.full). [Nucleic Acids Research](http://nar.oxfordjournals.org/). 2016 Jun 1. pii: gkw501. doi: 10.1093/nar/gkw501. PubMed PMID: 27257077.

Issues, bug reports, or feature requests can be posted to the github issues page. The developers can be contacted at JunctionSeq-Contact (at) list.nih.gov.