issues
search
hartwigmedical
/
hmftools
Various algorithms for analysing genomics data
GNU General Public License v3.0
189
stars
58
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
DEV-4061: Add all OncoAct fields to Compar
#618
DFKoetsier
opened
2 days ago
0
SAGE error 'Cannot read file "TransStart' because 'x' is null on Ensembl homo_sapiens_core_111_38
#617
ypradat
closed
1 day ago
3
SAGE configuration for whole-exome data
#616
ypradat
closed
1 day ago
3
DEV-4083: Incorporate biallelic probability in Orange
#615
DFKoetsier
closed
5 days ago
0
com.hartwig.hmftools.amber.AmberApplication
#614
ucsfpan
closed
3 days ago
0
[ERROR] - failed processing sample(HCC1395): java.lang.NullPointerException: Cannot invoke "java.lang.Integer.intValue()" because the return value of "java.util.Map.get(Object)" is null
#613
yangxin-9
opened
2 weeks ago
1
ACTIN-292: Add Chromosomal Rearrangements
#612
cbruel
closed
1 week ago
0
Orange: DEV-4077: Change wording RUO disclaimer
#610
DFKoetsier
closed
3 weeks ago
0
INFRA-541 Cuppa containerisation
#609
nedleitch
closed
3 weeks ago
2
Building Cuppa
#608
weewus
closed
2 weeks ago
2
ACTIN-1142: Ensure only exonic variants that are phased with reported variants are shown in ORANGE
#607
cbruel
closed
4 weeks ago
0
How to find the known_fusion_db_file files
#606
DanielNaro
closed
1 month ago
1
INFRA-541 Dockerfiles for hmf-tools
#605
nedleitch
opened
1 month ago
1
Invalid reference data error
#604
rmapbut
closed
1 month ago
1
Can't access common resources public for CUPPA pre-trained classifier
#603
weewus
closed
1 month ago
2
INFRA-653 Switch to Github app authentication
#602
nedleitch
closed
1 month ago
0
LINX Low Copy Number Accuracy
#601
amarinderthind
closed
1 month ago
2
hmf pipeline for ecdna analysis
#600
zhaowsong
closed
1 month ago
3
DEV-4063: Adjust gene-utils for new 38 specific columns Fusion Knowledgebase
#599
DFKoetsier
closed
1 month ago
0
ACTIN-541 Dockerfile for Purple
#598
nedleitch
closed
1 month ago
1
ACTIN-824: Add "Presence of tumor stats" to quality control page
#597
kzuberihmf
closed
1 month ago
10
INFRA-541 Build Orange Docker container
#596
nedleitch
closed
1 month ago
3
ACTIN-1131: Correct orange
#595
cbruel
closed
2 months ago
0
Difference between IMPACT and PAVE_TI in PURPLE vcf file
#594
HenriettaHolze
closed
2 months ago
1
Feature Request: Joint CNV Calling
#593
seedgeorge
closed
2 months ago
1
Different Calculation of PURPLE_AF
#592
Se-Jung-LEE
closed
2 months ago
4
INFRA-541 Orange Dockerfile, call it from build
#591
nedleitch
closed
2 months ago
1
adding SAMvalidation option to LiLAC and TEAL
#590
nan5895
closed
2 months ago
3
Purple PoissonDistribution error occurs at negative copyNumber values for regions with somatic SNVs
#589
tmfreeman400
closed
2 months ago
3
ACTIN-293: Ensure HIV is never reported in ORANGE report
#588
cbruel
closed
2 months ago
0
Representing unmatched PURPLE copy number
#587
Chunkz616
closed
2 months ago
5
ACTIN-50: Show all viable fusions in ORANGE in case no HIGH driver events
#586
cbruel
closed
2 months ago
0
Somatic CNV calling in case of pre-existing CNVs
#585
HenriettaHolze
closed
2 months ago
5
ACTIN-823: Add unsupported segments % to quality control page
#584
cbruel
closed
2 months ago
0
ACTIN-96: Sort signatures by allocation and add etiology
#583
cbruel
closed
2 months ago
0
INFRA-585 create a dockerfile for hmf id generator
#582
mvanniekerkHartwig
closed
2 months ago
0
Unable to run COBALT in tumor only mode
#581
Chunkz616
closed
2 months ago
1
INFRA-408 add back snpcheck and remove lucene dependency
#580
mvanniekerkHartwig
closed
2 months ago
0
Plotting Raw Copy-Number Results
#579
seedgeorge
closed
2 months ago
5
INFRA-408 remove clinical DB SQL definitions
#578
mvanniekerkHartwig
closed
2 months ago
0
ACTIN-94: Use Linx reportableReasons in ORANGE
#577
cbruel
closed
2 months ago
3
Linx annotations results
#576
zhaowsong
closed
2 months ago
1
INFRA-408 move clinical loader code to separate repo
#575
mvanniekerkHartwig
closed
2 months ago
0
ACTIN-1084: Fix glitch in wild type algo
#574
kduyvesteyn
closed
3 months ago
0
Advice needed in regards to the `gridss_blacklist` within `hmf_dna_pipeline_resources.38_v5.34.tar.gz`
#573
Teezi
closed
3 months ago
3
GRIPSS running issue
#572
Teezi
closed
3 months ago
1
INFRA-499 Backport db_sample argument for CIDER and TEAL loader
#571
mdenburger
closed
3 months ago
0
java.lang.ClassCastException: class java.util.ArrayList cannot be cast to class java.lang.String
#570
lipikakalson
closed
2 months ago
6
ACTIN-1057: Filter NaN likelihoods from CUPPA when converting in ORANGE
#569
kduyvesteyn
closed
3 months ago
0
Length neoepitopes
#568
p-levy
closed
3 months ago
2
Next