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hartwigmedical
/
hmftools
Various algorithms for analysing genomics data
GNU General Public License v3.0
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DEV-3766: Fix germline MVLH table in PDF
#526
DFKoetsier
closed
4 months ago
1
Update README_ONCOANALYSER.md
#525
scwatts
closed
4 months ago
0
Latest version of PURPLE is not working with MultiQC
#524
insilicool
closed
4 months ago
1
GRIPSS: missing sample names error
#523
Indianhedgehog
closed
4 months ago
2
INFRA-266 Improve patient-db loaders
#522
mdenburger
closed
4 months ago
1
mutect2 PURPLE Compatiblity
#521
zhaowsong
closed
4 months ago
1
mutect2 for purple
#520
zhaowsong
closed
4 months ago
0
SAGE Germline files
#519
Indianhedgehog
closed
4 months ago
1
TEAL error: Exception in thread "main" java.lang.IllegalArgumentException: Comparison method violates its general contract!
#518
Ansepil
closed
4 months ago
5
Inquiry Regarding Final SV and CNV Results
#517
zhaowsong
closed
4 months ago
2
Tricking SAGE to work with a modified ref genome
#516
Pranav-Garg
closed
4 months ago
3
Hotspots
#515
mimifp
closed
4 months ago
2
Linx plotting error
#514
jaesvi
closed
4 months ago
3
ACTIN-570: Handle CL of germline->somatic converted variants in ORANGE
#513
kzuberihmf
closed
4 months ago
0
cobalt targeted mode null pointer exception
#512
briankegerreis
opened
5 months ago
2
Some questions about PON files
#511
xuxingyubio
closed
4 months ago
1
question on Purple output
#510
riccardobergamin
closed
5 months ago
6
ACTIN-541: Throw exception in case isofox cancer type does not exist in gene distribution data
#509
kduyvesteyn
closed
5 months ago
0
Bump pillow from 8.2.0 to 10.2.0 in /cuppa/src/main/resources/cuppa-chart
#508
dependabot[bot]
opened
5 months ago
0
DEV-3740: Adjust for germline deletions heterozygous in tumor
#507
DFKoetsier
closed
5 months ago
1
INFRA-204 make program exit if maven build fails
#506
KasperWolsink99
closed
5 months ago
0
[FATAL] Error executing R script in Amber
#505
XinweiZhao202
closed
5 months ago
12
ACTIN-361: linx plot counts shouldn't include simple clusters
#504
kzuberihmf
closed
5 months ago
0
DEV-3727: Add option to PAVE to never PON-filter ClinVar pathogenic variants
#503
DFKoetsier
closed
5 months ago
1
DEV-3738 "At least" versions of cuppa-chart deps
#502
nedleitch
closed
5 months ago
2
LILAC error: Exception in thread "main" java.lang.NullPointerException: Cannot invoke "java.lang.Integer.intValue()" because the return value of "java.util.Map.get(Object)" is null
#501
LongpanUPC
closed
1 month ago
3
AUS-213: Added CUPPA v2 output into ORANGE while maintaining compatibility for CUPPA v1
#500
luan-n-nguyen
closed
5 months ago
7
Esvee
#499
charlesshale
closed
6 months ago
0
question on bam tools..
#498
nan5895
closed
4 months ago
2
ACTIN-46: Make health checker component for WTS
#497
kzuberihmf
closed
5 months ago
1
AUS-204: CUPPAv2 output into ORANGE; Moved ORANGE changes from master to AUS-204 branch
#496
luan-n-nguyen
closed
5 months ago
10
Bump pillow from 8.2.0 to 10.0.1 in /cuppa/src/main/resources/cuppa-chart
#495
dependabot[bot]
closed
5 months ago
1
Out of memory when running isofox TRANSCRIPT_COUNTS
#494
onebeingmay
closed
1 month ago
5
abundance estimate from cider
#493
alhafidzhamdan
closed
3 months ago
2
AUS-204: CUPPAv2 output into orange
#492
luan-n-nguyen
closed
6 months ago
0
Adjust oncoanalyser README: clarity, GH repo URL
#491
scwatts
closed
6 months ago
0
ACTIN-405: Change display of fusions to adhere to HGVS standard
#490
kduyvesteyn
closed
7 months ago
0
Update oncoanalyser README
#489
scwatts
closed
7 months ago
0
ACTIN-381: Fix bug with selecting high/low expressed genes for samples without cancer type
#488
kduyvesteyn
closed
7 months ago
0
ACTIN-376: support verifier use multiple data model jars by shading
#487
kzuberihmf
closed
8 months ago
0
ACTIN-370: Improve a few findings from ORANGE v3.0.0 testing
#486
kduyvesteyn
closed
8 months ago
0
Cobalt issue with read counting in PacBio HiFi reads
#485
proteinosome
closed
4 months ago
13
Mkcmkc unmap
#484
charlesshale
closed
8 months ago
0
ACTIN-282: Replace Purple drivers with Linx drivers
#483
cbruel
closed
8 months ago
0
ACTIN-357: Add linx drivers to ORANGE datamodel
#482
kduyvesteyn
closed
8 months ago
0
ACTIN-352: Revise orange config to clearly separate modes of operation
#481
kzuberihmf
closed
8 months ago
0
ACTIN-341: Write exonUp and exonDown to database
#480
kduyvesteyn
closed
8 months ago
0
ACTIN-353: Remove strand field from LinxBreakend ORANGE datamodel
#479
kduyvesteyn
closed
8 months ago
0
ACTIN-282: Fix notation (un)disrupted copy numbers in ORANGE
#478
cbruel
closed
8 months ago
0
ACTIN-273: Followup on potential ORANGE issues in v5.33 pipeline
#477
kzuberihmf
closed
8 months ago
0
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