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hartwigmedical
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hmftools
Various algorithms for analysing genomics data
GNU General Public License v3.0
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ACTIN-212: report multiple non-canonical variants on same driver gene
#476
kzuberihmf
closed
8 months ago
1
ACTIN-349: format SVs on Orange front page as percentile not percentage
#475
kzuberihmf
closed
8 months ago
0
prototype of adding a level of argument grouping to ConfigBuilder
#474
kzuberihmf
closed
8 months ago
3
ACTIN-322: Implement safe handling of missing linx plot directory
#473
kzuberihmf
closed
8 months ago
0
Minor cleanups
#472
james-aus
opened
8 months ago
0
ACTIN-336: Make ORANGE disclaimer more clear
#471
kduyvesteyn
closed
8 months ago
0
ACTIN-100: Improve consistency and quality of orange-datamodel
#470
kzuberihmf
closed
9 months ago
0
ACTIN-333: orange-datamodel jdk17 support
#469
kzuberihmf
closed
9 months ago
0
SAGE: multiallelic variants
#468
andrianovam
closed
4 months ago
1
DEV-3374 refactor hmftools-build and solve 'v' prefix issue
#467
KasperWolsink99
closed
9 months ago
0
ACTIN-324: add UGT1A1 status to front page of orange report
#466
kzuberihmf
closed
9 months ago
0
ACTIN-323: Blank out various sections in case of QC fail
#465
kduyvesteyn
closed
9 months ago
0
DEV-3605 Add backticks for jOOQ code generation
#464
stefvanlieshout
closed
9 months ago
0
SAGE issue : INDEL
#463
xdgene
closed
4 months ago
7
Dev 3566 orange 26 back to master
#462
mvanniekerkHartwig
closed
10 months ago
0
Dev 3566 orange 26
#461
mvanniekerkHartwig
closed
10 months ago
0
DEV-3502 Add LAMA tumor type and cohort to patient-db
#460
stefvanlieshout
closed
9 months ago
0
PURPLE: alternate copy number solutions
#459
felixbeaudry
closed
9 months ago
2
DEV-3566 fix virus interpretation
#458
mvanniekerkHartwig
closed
10 months ago
5
sage error mRefContext
#457
alhafidzhamdan
closed
9 months ago
4
SAGE run error
#456
xdgene
closed
10 months ago
0
Purple v3.9.1
#455
charlesshale
closed
10 months ago
0
Annotation enums of orange datamodel
#454
LiekeSchoenmaker
closed
10 months ago
0
i would like to know the information inside a GC_profile.1000bp.38.cnp file like what the column names are
#453
gagank4911
closed
10 months ago
1
from where can i create ensemble data direct file called ensembl_gene_data.csv, ensembl_protein_features.csv , ensembl_trans_exon_data.csv, ensembl_trans_splice_data.csv how did u create all these files
#452
gagank4911
closed
10 months ago
3
Orange datamodel uptick
#451
mvanniekerkHartwig
closed
10 months ago
0
i gave SNV as input in vcf file but getting some error amber run Invalid reference index -1
#450
gagank4911
closed
10 months ago
1
ACTIN-269: Throw exception instead of error message
#449
ninajacobs
closed
10 months ago
0
Exception in thread "main" java.lang.IllegalArgumentException: No enum constant com.hartwig.hmftools.common.amber.BaseDepthData.Base.GA
#448
gagank4911
closed
10 months ago
2
DEV-3501: Improve ORANGE layout for panel mode
#447
charlesshale
closed
10 months ago
1
ACTIN-266: Bump test data and example report to v5.33 pipeline
#446
kduyvesteyn
closed
10 months ago
0
ACTIN-261: Add new cohort constants & cause error instead of warn
#445
ninajacobs
closed
10 months ago
0
Hyper-segmented Samples Handling by Purple
#444
asd1289
closed
11 months ago
2
SAGE error
#443
alhafidzhamdan
closed
11 months ago
0
[PURPLE&LINX] Need helps with processing and interpretation
#442
nan5895
closed
11 months ago
2
GRIPSS: missing sample names error
#441
diljotgrewal
closed
10 months ago
2
amber vcf file
#440
gagank4911
closed
11 months ago
0
Amber executing basic command locate vcf.gz file that AMBER uses
#439
gagank4911
closed
11 months ago
11
[PURPLE] invalid reference data
#438
jennyp76
closed
11 months ago
5
[ERROR] COBALT error: Column chromosome does not exist in table readRatios summary
#437
AlexanderKotyurgin
closed
11 months ago
1
LILAC: [WARN ] gene depth coverage(A=1098 B=1089 C=1101) too low, exiting
#436
Y-u-q-i
closed
11 months ago
4
GC_profile profiles generation
#435
DanielNaro
closed
11 months ago
1
DEV-3317 add non-canonical transcripts data to orange
#434
KasperWolsink99
closed
11 months ago
2
DEV-3451 Ensure that mandatory files passed to Orange exist
#433
pauldwolfe
closed
11 months ago
1
[ERROR]cobalt germline error
#432
YuP9934
closed
10 months ago
2
DEV-3317 WIP transcript
#431
KasperWolsink99
closed
12 months ago
1
[WARN ] - sample(tumor-id) missing viral annotations file
#430
YingYa
closed
11 months ago
2
Linx neo-epitope file(tumor-id.linx.neoepitope.tsv) not found
#429
YingYa
closed
11 months ago
1
ORANGE (v2.5.0) could not find features plots from CUPPA (v1.8)
#428
YingYa
closed
9 months ago
1
ORANGE (v2.5.0) failed to load LINX (v1.23.6) plots
#427
YingYa
closed
11 months ago
1
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