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hasindu2008
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slow5tools
Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.
https://hasindu2008.github.io/slow5tools
MIT License
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Error concerning conflict of run-ids in multi-fast5 file
#117
sachingadakh
opened
1 week ago
4
Workflows
#116
hasindu2008
closed
1 week ago
0
Problem merging files
#115
MarioRinBarr
closed
1 week ago
3
Add 'header' only output as option in 'View' function
#114
alegione
closed
1 month ago
2
Error in slow5tools get
#113
loganylchen
closed
1 week ago
13
Error in slow5tools merge
#112
lyj95618
closed
1 week ago
4
Ensuring File Integrity and Accuracy in Processing Custom Genome blow5 Files
#111
KDalcin
closed
1 week ago
5
Dev
#110
hasindu2008
closed
2 months ago
0
Could not create read group in fast5 file
#109
Theo-Nelson
closed
1 week ago
6
Could not create read group
#108
maximilianmordig
closed
4 months ago
4
[main_samview] fail to read the header from "test_example.slow5".
#107
Koeng101
closed
6 months ago
3
Bad fast5: Attribute Raw/tracked_scaling_scale
#106
nickst85
closed
1 week ago
9
Error during fast5 conversion: primary data field missing
#104
maximilianmordig
closed
7 months ago
6
Help with a tricky FAST5
#103
hengjwj
closed
7 months ago
6
demux pod5s, correct workflow?
#102
jorisbalc
closed
8 months ago
4
typos, consistency with cli for skim
#101
BonsonW
closed
8 months ago
0
typos, consistency with cli for skim
#100
BonsonW
closed
8 months ago
0
slow5tools f2s returns different bad reads when run on all single FAST5s vs. when run on an individual folder of single FAST5s
#99
hengjwj
closed
11 months ago
12
write nan value for median before s2f
#98
hiruna72
closed
12 months ago
0
fix s2f when enum is empty
#97
hiruna72
closed
1 year ago
0
Error encountered during repeated f2s
#96
hengjwj
closed
12 months ago
22
Malformed blow5 record - can they still be merged?
#95
hengjwj
closed
1 year ago
8
Update software.md
#94
hasindu2008
closed
1 year ago
0
Update software.md
#93
hasindu2008
closed
1 year ago
0
Playback error
#92
jennieli421
closed
1 year ago
13
Error in converting fast5 to slow5
#91
dsaha0295
closed
12 months ago
3
slow5 files indexing problem in f5c
#90
rezarahman12
closed
1 year ago
17
Errors when convert fast5 to slow5
#89
loganylchen
closed
1 year ago
16
[Error][Improvement] Unhandled error while file writing in a non-permitted directories
#88
AnjanaSenanayake
closed
10 months ago
2
Dev
#87
hasindu2008
closed
1 year ago
0
get:skip with warning if a read is not found
#86
hiruna72
closed
1 year ago
0
Bad fast5 attribute pore type
#85
mbhall88
closed
1 year ago
10
memory issue
#84
svennd
closed
1 year ago
9
[f2s_child_worker::ERROR] Bad fast5
#83
MeHelmy
closed
1 year ago
12
Basecall with Guppy
#82
SziKayLeung
closed
1 year ago
11
Bad fast5 - [fast5_attribute_itr::ERROR]
#81
chilampoon
closed
2 years ago
5
fix for new Raw attribute num_minknow_events
#80
hiruna72
closed
2 years ago
0
Are pA values from slow5tools normalized?
#79
chilampoon
closed
2 years ago
2
SLOW5 files not working with nanopolish polyA
#78
maximus-sci
closed
2 years ago
2
Missing auxiliary field
#77
chilampoon
closed
2 years ago
4
fast5 to blow5 conversion and back to fast5 gives size difference
#76
thomasguignard
closed
2 years ago
2
Dev
#75
hasindu2008
closed
2 years ago
0
check hdf5 enum return values
#74
hiruna72
closed
2 years ago
0
cat checks if the aux atr order is correct
#73
hiruna72
closed
2 years ago
0
Dev
#72
hasindu2008
closed
2 years ago
0
Dev
#71
hasindu2008
closed
2 years ago
0
data loss
#70
jrhendrix
closed
2 years ago
11
Compress subset of reads
#69
mbhall88
closed
10 months ago
5
F2s hackerank
#68
hiruna72
closed
2 years ago
0
quickcheck all slow5s created in testcases
#67
hiruna72
closed
2 years ago
0
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