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hasindu2008
/
slow5tools
Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.
https://hasindu2008.github.io/slow5tools
MIT License
90
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if lossy split then use multithreading
#66
hiruna72
closed
2 years ago
0
Split multithread
#65
hiruna72
closed
2 years ago
0
Advanced batching for merge
#64
hiruna72
closed
2 years ago
1
use regex to find input files
#63
hiruna72
closed
2 years ago
0
dynamically create warn_message char arrays
#62
hiruna72
closed
2 years ago
0
F2s enum debug
#61
hiruna72
closed
2 years ago
0
Allow to keep multiple run_ids when multi-fast5 contains them
#60
waltergallegog
closed
2 years ago
4
Conversion back to fast5 is broken in some cases
#59
mattloose
closed
1 year ago
11
Converting back to fast5 increases size
#58
DrownedMala
closed
2 years ago
4
more warnings for merge
#57
hiruna72
closed
2 years ago
0
if run_id is not in the read group check tracking_id group before error out
#56
hiruna72
closed
2 years ago
0
Header attributes warning
#55
mbhall88
closed
2 years ago
14
run_id issue in certain files
#54
SAMtoBAM
closed
2 years ago
11
Option to retain directory structure
#53
mbhall88
closed
2 years ago
3
Short help not working on s2f
#52
mbhall88
closed
2 years ago
2
Retain directory structure of the fast5 input directory
#51
hiruna72
closed
2 years ago
0
how to compare fast5 files
#50
RichardCorbett
closed
2 years ago
5
Dev
#49
hasindu2008
closed
2 years ago
0
S2f clean
#48
hiruna72
closed
2 years ago
0
Dev
#47
hasindu2008
closed
2 years ago
0
S2f clean
#46
hiruna72
closed
2 years ago
0
S2f clean
#45
hiruna72
closed
2 years ago
0
Dynamic dump
#44
hiruna72
closed
2 years ago
0
More tests
#43
hasindu2008
closed
2 years ago
0
Dynamic dump
#42
hiruna72
closed
2 years ago
0
More tests
#41
hasindu2008
closed
2 years ago
0
more testcases and the . case
#40
hasindu2008
closed
2 years ago
0
parse user args using functions
#39
hiruna72
closed
2 years ago
0
S2f bug fix
#38
hiruna72
closed
2 years ago
0
Merge improved
#37
hiruna72
closed
2 years ago
0
Merge bugs
#36
hasindu2008
closed
2 years ago
0
F2s improved
#35
hiruna72
closed
2 years ago
0
End reason
#34
hiruna72
closed
2 years ago
0
slow5tools take new compression parameters
#33
hiruna72
closed
2 years ago
0
Stats prints the number of auxiliary fields and their names
#32
hiruna72
closed
2 years ago
0
s2f now supports lossy slow5s
#31
hiruna72
closed
2 years ago
0
Vbz hack
#30
hasindu2008
closed
2 years ago
0
Testcases updated
#29
hiruna72
closed
2 years ago
0
F2s bugs fixed
#28
hiruna72
closed
2 years ago
0
BLOW5 file size is larger than FAST5 VBZ compressed
#27
nextgenusfs
closed
2 years ago
6
adding quickcheck subprogramme
#26
hasindu2008
closed
2 years ago
0
Concat basic setup
#25
hiruna72
closed
2 years ago
0
detect never seen attributes and make sure every read has a run_id
#24
hiruna72
closed
2 years ago
0
F2s modified
#23
hiruna72
closed
2 years ago
0
Merge parallel
#22
hiruna72
closed
2 years ago
0
View parallel
#21
hiruna72
closed
2 years ago
0
Bug fix
#20
hiruna72
closed
2 years ago
0
Bug fix
#19
hiruna72
closed
2 years ago
0
Bug fix
#18
hiruna72
closed
2 years ago
0
Dev
#17
hasindu2008
closed
3 years ago
0
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