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hassansaei
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VNtyper
A tool to genotype MUC1 coding VNTR in ADTKD
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ci: build Docker image via ghcr.io
#31
holtgrewe
opened
1 day ago
0
Feature request: add documentation to the API docs page
#30
berntpopp
closed
1 day ago
0
Feature request: implement email service in API
#29
berntpopp
closed
1 day ago
0
Feature request: add endpoint for tool and API version in the API
#28
berntpopp
closed
1 day ago
0
Feature request: secure usage statistics in the API
#27
berntpopp
closed
1 day ago
0
Feature request: implement cohort option in API
#26
berntpopp
closed
1 day ago
1
ci: Set Up CI/CD Pipeline Including Docker Container Build
#25
berntpopp
opened
4 days ago
0
Feature request: Create Configuration File for Container Builds
#24
berntpopp
opened
4 days ago
0
Feature request: review and implement SharkVNTyper method/pipeline
#23
berntpopp
opened
4 days ago
0
Feature request: Use the Kestrel Command Option -s --sample [<SAMPLE_NAME>] to Set the Sample Name
#22
berntpopp
opened
4 days ago
0
Feature request: Support Multiple Output Formats (CSV, TSV, JSON)
#21
berntpopp
opened
4 days ago
0
Feature request: File Handling Improvements
#20
berntpopp
opened
4 days ago
0
refactor: modularize code, especially kestrel_genotyping.py
#19
berntpopp
opened
4 days ago
0
Docs: improve documentation for logic and functionality
#18
berntpopp
opened
4 days ago
0
Featue request: Rename Functions and Variables to a Common Scheme (PEP8)
#17
berntpopp
opened
4 days ago
0
Feature request: Add Support for More File Formats (e.g., CRAM Instead of Just BAM)
#16
berntpopp
opened
4 days ago
0
Refactor: Put Magic Numbers and Hardcoded Values into Config File
#15
berntpopp
opened
4 days ago
0
Refactor: Unify annotation and Filtering logic in Kestrel script to produce one table
#14
berntpopp
opened
4 days ago
1
Bug: code-adVNTR_RUs.fa is not a valid FASTA file
#13
berntpopp
opened
4 days ago
0
Feature request: Find a solution to display the correct coverage in the IGV js session in the report
#12
berntpopp
opened
4 days ago
0
chore: Move java_path to General Configuration
#11
berntpopp
opened
4 days ago
0
Bug: Example 5 does not produce same result in online and CLI tool version
#10
berntpopp
closed
4 days ago
2
Feature request: online mode in the cli
#9
berntpopp
opened
1 week ago
0
Bug: Vntyper Cohort: demands at least one advntr output
#8
hassansaei
opened
2 weeks ago
0
Bug: Fastp: Input contains unmatched paired reads
#7
hassansaei
opened
2 weeks ago
0
Explain Kestrel postprocessing heuristic better?
#6
holtgrewe
opened
3 weeks ago
1
chore: merge development brach to main with version to 2.0.0-alpha
#5
berntpopp
closed
3 weeks ago
0
v1.3.0 Docker image crashes with "No such file or directory" error
#4
holtgrewe
closed
3 weeks ago
1
New feature. VNTR coverage added
#3
hassansaei
closed
1 month ago
0
Red_Zone in Kestrel_concat not defined
#2
berntpopp
closed
1 month ago
1
Bug: regex module missing in install
#1
berntpopp
closed
1 month ago
1