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bcbioRNASeq
R package for bcbio RNA-seq analysis.
https://bioinformatics.sph.harvard.edu/bcbioRNASeq
GNU Affero General Public License v3.0
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Future Impovements Suggestion
#145
kokyriakidis
closed
3 years ago
3
v0.3.30
#144
mjsteinbaugh
closed
4 years ago
0
bcbioRNAseq encountered problem in KEGG analysis when processing data from Rattus norvegicus
#143
jxshi
closed
4 years ago
2
Error while importing bcbio run
#142
kokyriakidis
closed
4 years ago
8
Adding multible bcbio run in bcbio.rda object
#141
kokyriakidis
closed
3 years ago
10
Error running RMarkdown templates
#140
kokyriakidis
closed
4 years ago
5
bcbio template?
#139
kokyriakidis
closed
4 years ago
5
v0.3.29
#138
mjsteinbaugh
closed
5 years ago
0
v0.3.28
#137
mjsteinbaugh
closed
5 years ago
0
v0.3.27
#136
mjsteinbaugh
closed
5 years ago
0
v0.3.26
#135
mjsteinbaugh
closed
5 years ago
0
v0.3.25
#134
mjsteinbaugh
closed
5 years ago
0
v0.3.24
#133
mjsteinbaugh
closed
5 years ago
0
Installation of bcbioRNASeq for R 3.6.1
#132
marypiper
closed
5 years ago
8
v0.3.23
#131
mjsteinbaugh
closed
5 years ago
0
bioconda package
#130
roryk
closed
5 years ago
4
v0.3.22
#129
mjsteinbaugh
closed
5 years ago
0
error loading bcbio data into bcbiornaseq R object
#128
PatrickJReed
closed
5 years ago
3
Unable to load data from ```final``` folder
#127
jxshi
closed
5 years ago
5
Error in getVarianceStabilizedData(cds): is(cds, "CountDataSet") is not TRUE
#126
jxshi
closed
5 years ago
11
fixed a tiny bug in differential_expression.Rmd template
#125
naumenko-sa
closed
5 years ago
1
fixed a small bug that was breaking QC report generation
#124
naumenko-sa
closed
5 years ago
1
Documentation fixes
#123
mjsteinbaugh
closed
5 years ago
0
v0.2.10
#122
mjsteinbaugh
closed
5 years ago
0
Installation issue: connection time out
#121
naumenko-sa
closed
5 years ago
2
samplename order fix
#120
roryk
closed
5 years ago
16
could not locate "res.rda" file of "DESeqResults" type
#119
maximillo
closed
5 years ago
1
stopifnot(is(res, "DESeqResults"))
#118
jxshi
closed
5 years ago
2
Sample mixup when sample name starts with a number
#117
fredrikka
closed
6 years ago
3
are_disjoint_sets error when loading bcbio RNAseq run
#116
mshadbolt
closed
6 years ago
8
v0.2.7
#115
mjsteinbaugh
closed
6 years ago
4
Merge v0.2.7 draft to master
#114
mjsteinbaugh
closed
6 years ago
0
v0.2.6
#113
mjsteinbaugh
closed
6 years ago
1
error with plotDEGHeatmap and plotDEGPCA
#112
mistrm82
closed
6 years ago
1
not normalized counts when saving results tables from DE
#111
mistrm82
closed
6 years ago
8
Has v0.2.5 been released?
#110
corburn
closed
6 years ago
1
Improve conda installation instructions
#109
mjsteinbaugh
closed
6 years ago
0
Update README.md
#108
jnhutchinson
closed
6 years ago
1
Use non-normalized counts by default for gene saturation methods.
#107
roryk
closed
6 years ago
5
v0.2.6
#106
mjsteinbaugh
closed
6 years ago
15
v0.2.6
#105
mjsteinbaugh
closed
6 years ago
0
v0.2.5
#104
mjsteinbaugh
closed
6 years ago
14
Support for other count formats
#103
ohofmann
closed
6 years ago
4
`bcbioRNASeq()` constructor default tweak
#102
mjsteinbaugh
closed
6 years ago
1
v0.2.4
#101
mjsteinbaugh
closed
6 years ago
9
Error: package or namespace load failed for ‘IRanges’
#100
vladsavelyev
closed
6 years ago
9
How to display the gene symbols on the volcano plot in the differential expression template?
#99
hliu2016
closed
6 years ago
2
Error: cannot subset by character when rownames are NULL
#98
hliu2016
closed
6 years ago
10
KEGG plots fail in Funcitonal analysis template
#97
jnhutchinson
closed
6 years ago
4
v0.2.3
#96
mjsteinbaugh
closed
6 years ago
5
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