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hcdenbakker
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colorid
Experiments with using BIGSI data structure for metagenomic and QC applications
MIT License
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many rejections for real-world dataset
#41
jianshu93
opened
2 weeks ago
0
gz support
#40
jianshu93
opened
1 month ago
0
use xxh3 for compile time Neon support
#39
jianshu93
closed
1 month ago
0
use xxh3 for SIMD support
#38
jianshu93
closed
1 month ago
1
Bump version
#37
lskatz
opened
1 year ago
0
version flag returns incorrect version?
#36
kapsakcj
closed
3 years ago
4
thread 'main' panicked at 'byte index 39 is out of bounds of `AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA`',
#35
lskatz
closed
5 years ago
2
forgot to push updated Cargo.toml
#34
hcdenbakker
closed
5 years ago
0
major rewrite Sept2018
#33
hcdenbakker
closed
5 years ago
0
fix bug reads <k for paired end
#32
hcdenbakker
closed
6 years ago
0
Experimental
#31
hcdenbakker
closed
6 years ago
0
divisor of zero fix
#30
hcdenbakker
closed
6 years ago
0
new functionalities for read_id fq
#29
hcdenbakker
closed
6 years ago
0
division by zero fix
#28
hcdenbakker
closed
6 years ago
0
fix divisor of zero bug in build.rs
#27
hcdenbakker
closed
6 years ago
0
read streaming, minimizers for fasta
#26
hcdenbakker
closed
6 years ago
0
cleanup unused imports
#25
hcdenbakker
closed
6 years ago
0
updated Travis test
#24
hcdenbakker
closed
6 years ago
0
minor changes, memory efficiency
#23
hcdenbakker
closed
6 years ago
0
fix isssues with minimizers
#22
hcdenbakker
closed
6 years ago
0
edit Cargo.toml to reflect reorganization
#21
hcdenbakker
closed
6 years ago
0
major reorganization, minimizers implemented
#20
hcdenbakker
closed
6 years ago
0
major rewrite July 2018
#19
hcdenbakker
closed
6 years ago
0
Experimental
#18
hcdenbakker
closed
6 years ago
0
pe functionaility, auto cutoff
#17
hcdenbakker
closed
6 years ago
1
kmer down sample option read_id
#16
hcdenbakker
closed
6 years ago
0
perfect match algorithm, help info subcommands
#15
hcdenbakker
closed
6 years ago
0
use non-threaded build if threads == 1
#14
hcdenbakker
closed
6 years ago
0
multi-threated index build, bug fixes, sparse indices
#13
hcdenbakker
closed
6 years ago
0
fix of kmer_fa fasta reader
#12
hcdenbakker
closed
6 years ago
0
bug fixes and minor improvements of search and build algorithms
#11
hcdenbakker
closed
6 years ago
0
more RAM efficient by using HashMap<usize, Vec<u8>> for index
#10
hcdenbakker
closed
6 years ago
0
changed IndexMap::new() to IndexMap::with_capacity(deserialized.map.l…
#9
hcdenbakker
closed
6 years ago
0
multi-threaded read clasification, only one search function
#8
hcdenbakker
closed
6 years ago
0
added new version
#7
hcdenbakker
closed
6 years ago
0
Experimental
#6
hcdenbakker
closed
6 years ago
0
use MultiGzDecoder instead of GzDecoder
#5
hcdenbakker
closed
6 years ago
0
added MIT license
#4
hcdenbakker
closed
6 years ago
0
travis integration
#3
lskatz
closed
6 years ago
0
travis ci integration
#2
lskatz
closed
6 years ago
0
Need help from @lskatz with travis CI
#1
hcdenbakker
closed
6 years ago
0