issues
search
healthdisparities
/
pastrami
A method for rapid sub-continental ancestry estimation.
GNU General Public License v3.0
7
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Simulation script was always picking one population as a reference
#32
lavanyarishishwar
closed
3 years ago
0
Reset colors after erroring out
#31
lavanyarishishwar
closed
3 years ago
0
plink vs plink2? Should subprocess blocks be placed in try/except blocks?
#30
ShivamSharma13
closed
3 years ago
0
Attribute Error in hapmake
#29
ShivamSharma13
closed
3 years ago
0
Rename "chunks" to something more descriptive
#28
lavanyarishishwar
opened
3 years ago
0
Query command progress
#27
lavanyarishishwar
opened
3 years ago
0
Coancestry subcommand and documentation improvement
#26
lavanyarishishwar
opened
3 years ago
0
Safe column breakdown with coanc subcommand
#25
lavanyarishishwar
opened
3 years ago
0
Color code log prints
#24
lavanyarishishwar
closed
3 years ago
0
Print full input options in log
#23
lavanyarishishwar
opened
3 years ago
0
Run "all" subcommand
#22
lavanyarishishwar
opened
3 years ago
0
Run each subcommand and ensure proper behavior
#21
lavanyarishishwar
closed
3 years ago
2
Create conda installer for Pastrami
#20
lavanyarishishwar
opened
3 years ago
0
Create pip installer for Pastrami
#19
lavanyarishishwar
opened
3 years ago
0
Populate README
#18
lavanyarishishwar
closed
3 years ago
0
Populate quickstart guide
#17
lavanyarishishwar
opened
3 years ago
0
Threads not fully working with all subcommand
#16
lavanyarishishwar
opened
3 years ago
1
Add flexibility to define arbitrary chromosomes
#15
lavanyarishishwar
opened
3 years ago
0
Provide ability to select a subset of chromosomes
#14
lavanyarishishwar
opened
3 years ago
0
Create a small test dataset
#13
lavanyarishishwar
opened
3 years ago
1
Implement progress bar for multiprocessing steps
#12
lavanyarishishwar
opened
3 years ago
0
Investigate why finegrain ancestry estimate sum can sometimes be 0
#11
lavanyarishishwar
opened
3 years ago
0
Catch cases when ind_id is not defined in the FAM file
#10
lavanyarishishwar
closed
3 years ago
0
Better handle pop-group file reading
#9
lavanyarishishwar
opened
3 years ago
0
Create temporary files for chromosome TPED plink pull
#8
lavanyarishishwar
closed
3 years ago
0
If user doesn't supply pop-group file, create one based on the TFAM file
#7
lavanyarishishwar
closed
3 years ago
0
Implement checks for dependency progams
#6
lavanyarishishwar
closed
3 years ago
0
Implement function to run commands safely
#5
lavanyarishishwar
closed
3 years ago
0
Implement all subcommand
#4
lavanyarishishwar
closed
3 years ago
0
Incorporate hapmake and aggregate into main Pastrami
#3
lavanyarishishwar
closed
3 years ago
0
Post-cleanup script
#2
lavanyarishishwar
closed
3 years ago
0
First python conversion
#1
lavanyarishishwar
closed
3 years ago
0