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helicalAI
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helical
This repository contains the python package for Helical
https://www.helical-ai.com/
GNU Affero General Public License v3.0
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Maxiallard patch 1
#116
maxiallard
closed
1 day ago
0
Merge updates in main into release
#115
mattwoodx
opened
4 days ago
0
Raise error if download fails
#114
bputzeys
closed
1 week ago
0
Raise error if download fails and include log message
#113
bputzeys
closed
1 week ago
0
Refactor fine-tuning
#112
mattwoodx
closed
2 weeks ago
0
Change dependency strictness
#111
mattwoodx
closed
2 weeks ago
0
Adding downloads where initial files might not be available anymore.
#110
maxiallard
closed
2 weeks ago
0
Bugfix: stop execution if no genes are present
#109
bputzeys
closed
2 weeks ago
0
Change workflow to exectute tests and notebooks sequentially
#108
bputzeys
closed
2 weeks ago
0
Change workflow
#107
bputzeys
closed
2 weeks ago
0
Dockerfile errors when building new image
#106
JesusGF1
closed
2 weeks ago
2
test
#105
bputzeys
closed
2 weeks ago
0
Change workflow name
#104
bputzeys
closed
2 weeks ago
0
test
#103
bputzeys
closed
2 weeks ago
0
Include converter tests
#102
bputzeys
closed
2 weeks ago
0
HyenaDNA Fine-Tuning Capabilities and Regression Head
#101
mattwoodx
closed
2 weeks ago
0
Typing updates, reordering and renaming
#100
bputzeys
closed
2 weeks ago
0
Typing fixes, refactoring and renaming
#99
bputzeys
closed
3 weeks ago
0
Fix Weight Scrambling in scGPT
#98
mattwoodx
closed
2 weeks ago
0
Changing to Helical Hugging Face Dataset In Repo
#97
mattwoodx
closed
4 weeks ago
0
Reduce train sample to stop timeout
#96
mattwoodx
closed
4 weeks ago
0
Fix Geneformer process_data
#95
mattwoodx
closed
4 weeks ago
0
Fix notebook errors
#94
JadSbai
closed
4 weeks ago
0
Jad fix notebooks
#93
JadSbai
closed
1 month ago
0
Fix file not found issue in notebook
#92
mattwoodx
closed
4 weeks ago
0
Added Geneformer v2, Fine-Tuning for RNA models, Bug Fixes for Mapping
#91
maxiallard
closed
4 weeks ago
1
Basic Fine-Tuning Capabilities For All RNA Models
#90
mattwoodx
closed
1 month ago
0
Add basic classification fine-tuning capabilities for Geneformer
#89
mattwoodx
closed
1 month ago
2
Geneformer v2
#88
JadSbai
closed
1 month ago
1
AttributeError: 'AnnData' object has no attribute 'collator_fn'
#87
JesusGF1
closed
1 month ago
4
Avoid mapping ensembl ids to ensembl ids
#86
bputzeys
closed
1 month ago
1
fixed naming of anndata
#85
maxiallard
closed
1 month ago
0
Fix data notebooks
#84
maxiallard
closed
1 month ago
0
Improvements UCE and Hydra introduction for configs
#83
maxiallard
closed
1 month ago
0
Adjust uce config
#82
bputzeys
closed
1 month ago
1
Improve uce memory foodprint
#81
bputzeys
closed
1 month ago
1
Include hydra configs for each model
#80
bputzeys
closed
2 months ago
1
changed version python
#79
maxiallard
closed
2 months ago
0
Fix typing issue for python<3.11
#78
bputzeys
closed
2 months ago
0
fixed typing issue for python<3.11
#77
maxiallard
closed
2 months ago
0
Adjust alcs
#76
bputzeys
closed
2 months ago
0
Remove requirement to run other workflow before this
#75
bputzeys
closed
2 months ago
0
Remove requirement to run other workflow before this.
#74
bputzeys
closed
2 months ago
0
Remove condition to only run workflow on release branch
#73
bputzeys
closed
2 months ago
0
Remove condition to only run workflow on release branch
#72
bputzeys
closed
2 months ago
0
Test
#71
bputzeys
closed
2 months ago
0
Include GitHub Action testing successfull runs for all Jupyter Notebooks in examples folder
#70
bputzeys
closed
2 months ago
0
Merge pull request #66 from helicalAI/main
#69
bputzeys
closed
2 months ago
0
Include notebook workflow
#68
bputzeys
closed
2 months ago
0
Include scanorama in example benchmarking
#67
bputzeys
closed
2 months ago
0
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