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helicalAI
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helical
This repository contains the python package for Helical
https://www.helical-ai.com/
GNU Affero General Public License v3.0
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Adjust model cards, fix notebooks, update run_benchmark
#66
bputzeys
closed
2 months ago
0
Fix notebooks
#65
maxiallard
closed
2 months ago
0
Alcs integration
#64
bputzeys
closed
2 months ago
3
.copy() instead of deepcopy
#63
marianaql
closed
2 months ago
0
Adjusting documentation
#62
marianaql
closed
2 months ago
0
Adjusting documentation
#61
marianaql
closed
2 months ago
0
Adjusting documentation
#60
marianaql
closed
2 months ago
0
Main
#59
maxiallard
closed
2 months ago
0
Update CITATION.bib
#58
maxiallard
closed
2 months ago
0
Include helical as pip package.
#57
bputzeys
closed
2 months ago
0
Pip packaging
#56
maxiallard
closed
2 months ago
0
Evaluate integration to run model inference automatically
#55
bputzeys
closed
3 months ago
0
Ensure adata.X contain integer counts
#54
bputzeys
closed
3 months ago
1
Adjusting documentation
#53
marianaql
closed
3 months ago
0
Ensure counts are ints
#52
maxiallard
closed
3 months ago
1
Adjusting notebooks
#51
marianaql
closed
1 month ago
0
Improve mapping to ensembl ids with pyensembl package
#50
bputzeys
closed
3 months ago
1
Update description.md
#49
maxiallard
closed
3 months ago
0
Bugfixes and fix Notebooks
#48
bputzeys
closed
3 months ago
0
Adjusting documentation for UCE
#47
marianaql
closed
3 months ago
1
Bugfixes, Run Notebooks again and variable name changes
#46
bputzeys
closed
3 months ago
0
Include batch integration evaluation in our benchmarking
#45
bputzeys
closed
3 months ago
0
Fix integration evaluation bug
#44
bputzeys
closed
3 months ago
0
Load embeddings outside models
#43
bputzeys
closed
3 months ago
0
Load embeddings outside models
#42
bputzeys
closed
3 months ago
0
Benchmark integration
#41
bputzeys
closed
3 months ago
0
Test mariana
#40
marianaql
closed
3 months ago
0
Test mariana
#39
marianaql
closed
3 months ago
0
Develop
#38
bputzeys
closed
3 months ago
0
Batch correction
#37
bputzeys
closed
3 months ago
0
Include benchmarking
#36
bputzeys
closed
4 months ago
1
Benchmark
#34
bputzeys
closed
4 months ago
0
Include Geneformer for Cell Type Annotation Tutorial also refactoring and unittests
#33
bputzeys
closed
4 months ago
0
Refactor scGPT
#32
bputzeys
closed
4 months ago
0
Refactor scgpt
#31
bputzeys
closed
4 months ago
0
Logo Changes
#30
maxiallard
closed
4 months ago
0
Include Cell Type Annotation notebook example
#29
bputzeys
closed
4 months ago
0
Fix links
#28
bputzeys
closed
4 months ago
0
Develop
#27
bputzeys
closed
4 months ago
0
Run HyenaDNA in Colab
#26
bputzeys
closed
4 months ago
0
Run notebook on colab
#25
bputzeys
closed
4 months ago
0
Run notebook on colab
#24
bputzeys
closed
4 months ago
0
HyenaDNA notebook example
#23
bputzeys
closed
4 months ago
0
Include other benchmark data
#22
bputzeys
closed
4 months ago
2
Improved Readme With Examples
#21
maxiallard
closed
4 months ago
0
removed scgpt IPython req
#20
maxiallard
closed
4 months ago
0
Added Colab Notebook Tags
#19
maxiallard
closed
4 months ago
0
Added Colab Notebook Tags and Improved GPU compatibility
#18
maxiallard
closed
4 months ago
0
Develop - Added Cards and HyenaDNA example
#17
maxiallard
closed
4 months ago
0
Include training notebook
#16
bputzeys
closed
4 months ago
0
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