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hesselberthlab
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scrunchy
R toolkit for the analysis of single-cell functional heterogeneity
https://scrunchy.hesselberthlab.org/
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#69
kriemo
closed
4 years ago
1
Use CRAN leiden
#68
jayhesselberth
closed
5 years ago
0
10x v3 codes
#67
jayhesselberth
opened
5 years ago
0
Add 10x Genomics V3 cell barcode map
#66
jayhesselberth
closed
5 years ago
0
Add map of 10x V3 cell indexes for mRNA to feature barcode
#65
jayhesselberth
closed
5 years ago
0
Use geom_sina from ggforce instead of ggbeeswarm
#64
jayhesselberth
opened
5 years ago
0
Analyses
#63
jayhesselberth
opened
5 years ago
0
load multiple features from a single sparseMatrix
#62
kriemo
closed
5 years ago
1
Add compatibility to read in feature and mrna data from cellranger
#61
kriemo
closed
5 years ago
5
adding stats to plots
#60
mandylr
closed
5 years ago
0
Add significance bars programatically
#59
jayhesselberth
closed
5 years ago
2
Add labels and fix plotting
#58
mandylr
closed
5 years ago
1
Make installation more robust
#57
jayhesselberth
opened
5 years ago
0
NCBI GEO submission
#56
jayhesselberth
closed
5 years ago
1
Add gene ids back to features.tsv.gz
#55
kriemo
closed
5 years ago
0
Implement calc_cell_cycle
#54
jayhesselberth
closed
5 years ago
0
Need ENS IDs for cyclone
#53
jayhesselberth
closed
5 years ago
4
reproducible cluster_leiden
#52
jayhesselberth
closed
5 years ago
0
clustering with Leiden algorithm
#51
jayhesselberth
opened
5 years ago
1
Implement cluster_leiden
#50
jayhesselberth
closed
5 years ago
0
Enrichment score for stats
#49
jayhesselberth
closed
5 years ago
1
Activity ratios
#48
jayhesselberth
closed
5 years ago
1
cell type classifications
#47
mandylr
closed
5 years ago
2
add tests and clean up of read/write functions
#46
kriemo
closed
5 years ago
0
Implement stat_anova
#45
jayhesselberth
closed
5 years ago
0
update file inputs to be gzipped
#44
kriemo
closed
5 years ago
0
Rename stat_activity_grouped
#43
jayhesselberth
closed
5 years ago
0
ANOVA strategy
#42
jayhesselberth
opened
5 years ago
2
differences between activities and groups
#41
jayhesselberth
opened
5 years ago
1
all-by-all correlations
#40
jayhesselberth
opened
5 years ago
0
Seeds for reproducible calcs
#39
jayhesselberth
closed
5 years ago
0
stats reference
#38
jayhesselberth
closed
5 years ago
1
Implement calc_group_stats
#37
jayhesselberth
closed
5 years ago
0
Behavior of tidy_logcounts
#36
jayhesselberth
closed
5 years ago
0
utility functions to filter sparse matrix
#35
kriemo
closed
5 years ago
0
Add labels to plot_dims
#34
jayhesselberth
closed
5 years ago
1
add some mrnas
#33
kriemo
closed
5 years ago
0
Add some mRNAs to fsce_tidy
#32
jayhesselberth
closed
5 years ago
1
add code to generate subsampled data
#31
kriemo
closed
5 years ago
0
Implement plot_heatmap
#30
jayhesselberth
closed
5 years ago
0
Draw vlines at adduct positions
#29
jayhesselberth
opened
5 years ago
0
Need consistent cell IDs
#28
jayhesselberth
closed
5 years ago
0
More tidiers
#27
jayhesselberth
closed
5 years ago
0
Remove stringr dependency
#26
jayhesselberth
closed
5 years ago
0
check input files using file_exists rather than using string matching
#25
kriemo
closed
5 years ago
0
read_matrix path handling
#24
jayhesselberth
closed
5 years ago
1
Graph-based clustering
#23
jayhesselberth
closed
5 years ago
0
Small example data set
#22
jayhesselberth
closed
5 years ago
1
sequence saturation and knee plots
#21
kriemo
closed
5 years ago
0
utility function to convert umi_tools output to .mtx format.
#20
kriemo
closed
5 years ago
0
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