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hgb-bin-proteomics
/
CandidateSearch
Proof-of-concept implementation of a search engine that uses sparse matrix multiplication to identify the best peptide candidates for a given mass spectrum.
https://hgb-bin-proteomics.github.io/CandidateSearch
MIT License
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add ms amanda license info
#45
michabirklbauer
closed
3 months ago
0
add documentation
#44
michabirklbauer
closed
3 months ago
0
add final results
#43
michabirklbauer
closed
3 months ago
0
update readme
#42
michabirklbauer
closed
3 months ago
0
change executables to single files
#41
michabirklbauer
closed
5 months ago
0
update builds
#40
michabirklbauer
closed
5 months ago
0
Publish executables as standalone single files
#39
michabirklbauer
closed
5 months ago
0
Add Benchmarks and Results for v1.1.2
#38
michabirklbauer
closed
3 months ago
0
[INFO] readFASTA() potentially returns duplicate peptides
#37
michabirklbauer
closed
6 months ago
1
Disable git-lfs for example data
#36
michabirklbauer
closed
3 months ago
0
update readme
#35
michabirklbauer
closed
7 months ago
0
Create release 1.1.2
#34
michabirklbauer
closed
7 months ago
1
Add crossplatform info
#33
michabirklbauer
closed
7 months ago
0
ensure consistency of encoding
#32
michabirklbauer
closed
7 months ago
0
add crossplatform binaries
#31
michabirklbauer
closed
7 months ago
0
crossplatfrom dlls + docs
#30
michabirklbauer
closed
7 months ago
0
Move data to external hosting
#29
michabirklbauer
closed
7 months ago
0
Add info about MS Annika
#28
michabirklbauer
closed
7 months ago
0
v1.1.1 - Compatibility with new DLLs, fixed decimal parsing, db sort and big db warnings
#27
michabirklbauer
closed
9 months ago
1
Ordering of peptides
#26
michabirklbauer
closed
9 months ago
0
Low core usage for big matrices ( > 29 000 000 rows )
#25
michabirklbauer
closed
9 months ago
4
Parsing of double values depends on .NET culture -> unwanted behaviour
#24
michabirklbauer
closed
9 months ago
0
Add benchmarks
#23
michabirklbauer
closed
3 months ago
8
Add requirements
#22
michabirklbauer
closed
9 months ago
1
Update citation info
#21
michabirklbauer
opened
11 months ago
0
update doxygen docs
#20
michabirklbauer
closed
11 months ago
0
add test results
#19
michabirklbauer
closed
11 months ago
0
Publish gh-pages
#18
michabirklbauer
closed
3 months ago
3
add doxygen documentation
#17
michabirklbauer
closed
11 months ago
0
Approximating peptidoforms
#16
michabirklbauer
closed
11 months ago
1
Profile vs Centroid data
#15
michabirklbauer
closed
11 months ago
2
Finalize prototype todos
#14
michabirklbauer
closed
11 months ago
2
Peak comparison for deconvolution
#13
michabirklbauer
closed
11 months ago
2
Deconvolution not working
#12
michabirklbauer
closed
11 months ago
2
v1.0.0
#11
michabirklbauer
closed
11 months ago
0
Parameter for vector search approach
#10
michabirklbauer
closed
1 year ago
2
Search target and decoy database seperately
#9
michabirklbauer
closed
1 year ago
1
v0.9.1
#8
michabirklbauer
closed
1 year ago
0
Decoy Search as Settings Option
#7
michabirklbauer
closed
1 year ago
1
Implement deisotoping / charge deconvolution
#6
michabirklbauer
closed
11 months ago
6
Add parameters for vector search
#5
michabirklbauer
closed
1 year ago
1
Ion calculation
#4
michabirklbauer
closed
1 year ago
1
Peptidoforms
#3
michabirklbauer
closed
1 year ago
2
Decoy Search
#2
michabirklbauer
closed
1 year ago
0
prototype search engine
#1
michabirklbauer
closed
1 year ago
1