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hiclib / pastis

Poisson-based algorithm for stable inference of DNA Structure
http://hiclib.github.io/pastis/
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is this tool still available? #104

Open PengfeiInTuebingen opened 1 year ago

PengfeiInTuebingen commented 1 year ago

Dear developer? I installed this tool according to your instruction, but when I input pastis-mds command, there is nothing, Is this tool still available? Best, PF

NelleV commented 1 year ago

Hello, Yes this tool is still available. Can you describe how you've installed it? It seems to be a problem with installation. Thanks, N

PengfeiInTuebingen commented 1 year ago

Hi, Thanks for your reply! I think there has some problems with the installation. I installed this tool according to this page(https://projets.cbio.mines-paristech.fr/~nvaroquaux/pastis/install.html). generally, I created a conda environment for this tool, command like this: conda create -n pastis numpy scipy scikit-learn pandas autograd, and then i activate this conda env, i installed iced and pastis by pip, when i input all those commands pastis, pastis-mds, pastis-nmds, pastis-pm1, or pastis-pm2, there is no reaction. Best, PF